Query= MSMg01no119_f08.b1 MSMg01no119_f08.b1 CHROMAT_FILE:
MSMg01no119_f08.b1 PHD_FILE: MSMg01no119_f08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:26:27 2005
(623 letters)
>mm_chr6_26779294_26780316
Length = 1023
Score = 870 bits (450), Expect = 0.0
Identities = 582/656 (88%), Gaps = 53/656 (8%)
Strand = Plus / Minus
Query: 8 ttctgagttgacccgagcctggtctataaagtgagttccaggacagccaaggctatacag 67
||||||||||| | |||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 653 ttctgagttgaggcaagcctggtctataaagtgagatccaggacagctaaggctatacag 594
Query: 68 agaaaccctgtctcaaaaaaccaaaaaaccaaaacaaacaaaaacaaaaacaaaaacaaa 127
|||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 593 agaaacccggtctcgaaaaaccaaaaaaccaaaacaaacaaaaacaaaaac--------- 543
Query: 128 aaacaacaacaacaacaacaaaaacctctagagttcaggactatcagtcattttgagagg 187
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct: 542 aaacaacaacaacaacaac---aacctctagagttcaggactatcagtcattttcagagg 486
Query: 188 cggaaaggtgaaaagagacagtgagagtaaataggcatggaggactggggcatcattaat 247
||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct: 485 cggaaaggtgaaaagagacagtgagagcaaatgggcatggaggactggggcatcattaat 426
Query: 248 gttgtaacttagaaggcaatgatgaaagctcaacccagaaagtatgcctaaaacgctgat 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 gttgtaacttagaaggcaatgatgaaagctcaacccagaaagtatgcctaaaacgctgat 366
Query: 308 atgaaataatttctagtcttctctaaggaggagccagctaactgattaccatattccagg 367
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 atgaaatagtttctagtcttctctaaggaggagccagctaactgattaccatattccagg 306
Query: 368 tggtcagccctgaaatgcatggatctctgtgtgtgtgtg-g------------------- 407
|||||||||| ||||||||| ||||||||||||||||| |
Sbjct: 305 tggtcagcccaaaaatgcatgtatctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 246
Query: 408 ----gcgtgtgagtgtggatgtgtg--------tctgtga--ctgtgtgtacacatatat 453
| |||||||||||| |||||| |||||| ||||||||||||||||||
Sbjct: 245 gtgtgtgtgtgagtgtgg-tgtgtgcgtctgagtctgtgtgtctgtgtgtacacatatat 187
Query: 454 gcaaaaataaatggactcaatgtgtgtatatat------atatgtatatacatgtacaca 507
||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct: 186 gcaaaaataaatggactcaatttgtgtatatatgtacagatatgtatatacatgtacaca 127
Query: 508 tatatagagagaggtagagagaaaaagagagactgagagacaggtcatgaatttgaaggg 567
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct: 126 tatatagagagaggtagagagaaaaagagagactaagagacaggtcatgaatttggaggg 67
Query: 568 agataaaggaaagtgtaagtgatgtaattatactttattttaagataatatttaaa 623
|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct: 66 agataaaggaaagtgtaagtgatgtaattatagtttattttaaaataatatttaaa 11
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1023
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1013
Effective search space: 620969
Effective search space used: 620969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no119_f08.g1 MSMg01no119_f08.g1 CHROMAT_FILE:
MSMg01no119_f08.g1 PHD_FILE: MSMg01no119_f08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:26:27 2005
(583 letters)
>mm_chr6_26648531_26649506
Length = 976
Score = 1009 bits (522), Expect = 0.0
Identities = 564/582 (96%), Gaps = 7/582 (1%)
Strand = Plus / Plus
Query: 1 atgagtcagctgcctcgccattaccagctttaaaagtgttccacgtttagaaagatcaat 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 201 atgagtcagctgcctcgccattaccagctttaaaagtgttccacatttagaaagatcaat 260
Query: 61 gcaatcaaaactccagactccaccatttcaaagcaaatgcttatgttgaaccttatgcga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcaatcaaaactccagactccaccatttcaaagcaaatgcttatgttgaaccttatgcga 320
Query: 121 gaggctgtcaggatggagcttgcattattcaaacatgtgtatcagcaacctactggttcc 180
||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |||
Sbjct: 321 gaggctgtcaggatgcagcttacattattcaaacatgtgtatcagcaacctactgggtcc 380
Query: 181 agctcctcagttaggaaaacagtgaagaatagatgatataaatacagtgtaagccatact 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agctcctcagttaggaaaacagtgaagaatagatgatataaatacagtgtaagccatact 440
Query: 241 tcacctgaagttcaaaaatagacgttctgaaatcatgactcttgaggtgagaaactgata 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcacctgaagttcaaaaatagacgttctgaaatcatgactcttgaggtgagaaactgata 500
Query: 301 gacatttggaatgaggagatttcaaatgacaaattaatatttagctcaaataagaagaac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gacatttggaatgaggagatttcaaatgacaaattaatatttagctcaaataagaagaac 560
Query: 361 atctgttcaaataagaaattgaagagggtataattttcttacgttggtaacacttctatt 420
||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 561 atctgttaaaataagaaattgaagagagtataattttcttacgttggtaacacttctatt 620
Query: 421 tgacccaagtatgatttttgtctcataatatatttcatcttcatctatgtctctgctgaa 480
||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 621 tgacccaagtatgatttttgtctcataatatatttcatctttatatatgtctctgctgat 680
Query: 481 acattgcattttatttatttttttcttattggcttacagagtatgtgccatagtctgggt 540
|||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acattgcatttt-------tttttcttattggcttacagagtatgtgccatagtctgggt 733
Query: 541 gattatccaatcaaatttctcttccctattttcattcaaccc 582
||||||||||||||||||||||||| ||||||||||| ||||
Sbjct: 734 gattatccaatcaaatttctcttccttattttcattctaccc 775
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 976
Length adjustment: 10
Effective length of query: 573
Effective length of database: 966
Effective search space: 553518
Effective search space used: 553518
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
