BAC Information

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BAC

Clone NameMSMg01-119F13
Chromosome6 (Build37)
Map Location 30,573,319 - 30,573,764
singlet/doubletsinglet
Overlap geneCpa5
Upstream geneTspan33, Smo, 4631427C17Rik, D330017J20Rik, 1700023L04Rik, 1700080G18Rik, Nrf1, Ube2h, Zc3hc1, 2410127E18Rik, 2700094F01Rik, 1700025E21Rik, Cpa2, Cpa4
Downstream geneCpa1, Tsga14, Mest, Copg2, Copg2, Tsga13, Klf14, LOC100038973, AB041803, Mkln1, Podxl, EG619959
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-119F13.T7 (MSMg01no119_f13.b1)MSMg01-119F13.TJ (MSMg01no119_f13.g1)
ACCAG329989AG329990
length699707
length of high quality
(start - end)
73 (252 - 324)446 (73 - 518)
definitionCHROMAT_FILE: MSMg01no119_f13.b1 PHD_FILE: MSMg01no119_f13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:26:28 2005CHROMAT_FILE: MSMg01no119_f13.g1 PHD_FILE: MSMg01no119_f13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:26:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCAAAATTTGCGGCGCTAAACGATCACTATTTCCAACCGCGCGCGGAAGN
CAAACCATACCCNGACGGGGAGGNNANCNCCACNCAAGNACCCACACACA
CCAGAAAGCNNCNNCACCCCCNCNCNNNNCNAGGCNCNACAAGAANCGCN
AACNACACCCCAGCCAANCCAACCNCACACGNAACTGCCNTNCCNTCCCA
NACCCNAAGCANCCAGCACACCNCACCTAACCCGCTGAGANNNCCCGATT
TTCTAATCCAGGTCTGTGGCCAGGGGGGAAATTACAGAAATGTCCATGTC
TTTCCCTCTGTTTTTTTTTTATTNACAAACNCCACACCCAGCACAAAGAC
TGAGCTAGTTCACCCCAACTCTCCTGCCTCTTCTGTTTTCCATGCACTCA
TCATTGCGATCTGATAGTATAGTTCTAGAAACCTCTTATGGCGCTGTGGT
CTCTCTCATTACTATGTTACCTCAGAATCATTCTCTAGGTCACACAGTTA
CTCCTGGACTTTAATCTCTCTTCTTACATTGTCTCTTTAGCCACATAATG
GGCTTCTCCTTCCAGCCAATGTCTGGTTTGATCTTCATCTATCATTTTCC
CATTCCCCCCCCCCCGCCCACATTCACACACACCGGCCTTCCCCAAAAAT
TTTTTTTTTTTTTACGCAGAAACCCCCCGCCGTAACACAGTCTCCCTGC
CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTTGGGATTGCTAGGATCAGGCAGAGGC
CTGAGAAGGATTCTGAGACTATAGAGACTGTAACATGGGAGAGTACAGAG
AAGAGACATCAGGTGAAGGGATGTTTGGTGGTTCCAGAATCAAATAGAGA
GAATAACAGTGGAGAAGCACACCTAGGTAGGCTCAGAGTCTACGAAATGG
TTTGTTGGTAGGCACATTAAGGTGCGGATCCATTCTAGGCCAGAACAAAG
TAGGTGGAGGCTGCCTTCATAGTTCATCTCCTGACTAAGTGATTCATTGA
CCTCCTTGTGACCAGTCATGGTGTTCCGTGGCCCCAACTGTGGATTCTTG
AAGGCACAAGTGGCAGCAACCCAGGAACACTGGGAAGTCATGCTCGTGGA
AATAGGCAGTTGCTTTTACTTGGCAAAAATGTATGATGTAGTGACACCCA
GCTAGATGTTAGCGACAGTCACTGTGTTTAAGAGAAAATATACAGGTGGG
TGCAGGGACTTCCACTTCAGAAAGAAACCCATGGAAAAGACCTCATTTGC
CTGTTATAGGACATGCCATTATTGATAATGTCTACTCTATCATTCTTCTC
ATTTCCCAAGACCTGTAATGGAGAATCCATTTTCTTTCTAATGTTCATCC
TTTGAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no119_f13.g1 MSMg01no119_f13.g1 CHROMAT_FILE:
MSMg01no119_f13.g1 PHD_FILE: MSMg01no119_f13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:26:28 2005
         (446 letters)



>mm_chr6_30573119_30573964
          Length = 846

 Score =  855 bits (442), Expect = 0.0
 Identities = 445/446 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttgggattgctaggatcaggcagaggcctgagaaggattctgagactatagagactgta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttgggattgctaggatcaggcagaggcctgagaaggattctgagactatagagactgta 260

                                                                       
Query: 61  acatgggagagtacagagaagagacatcaggtgaagggatgtttggtggttccagaatca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acatgggagagtacagagaagagacatcaggtgaagggatgtttggtggttccagaatca 320

                                                                       
Query: 121 aatagagagaataacagtggagaagcacacctaggtaggctcagagtctacgaaatggtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatagagagaataacagtggagaagcacacctaggtaggctcagagtctacgaaatggtt 380

                                                                       
Query: 181 tgttggtaggcacattaaggtgcggatccattctaggccagaacaaagtaggtggaggct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgttggtaggcacattaaggtgcggatccattctaggccagaacaaagtaggtggaggct 440

                                                                       
Query: 241 gccttcatagttcatctcctgactaagtgattcattgacctccttgtgaccagtcatggt 300
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gccttcatagctcatctcctgactaagtgattcattgacctccttgtgaccagtcatggt 500

                                                                       
Query: 301 gttccgtggccccaactgtggattcttgaaggcacaagtggcagcaacccaggaacactg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gttccgtggccccaactgtggattcttgaaggcacaagtggcagcaacccaggaacactg 560

                                                                       
Query: 361 ggaagtcatgctcgtggaaataggcagttgcttttacttggcaaaaatgtatgatgtagt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggaagtcatgctcgtggaaataggcagttgcttttacttggcaaaaatgtatgatgtagt 620

                                     
Query: 421 gacacccagctagatgttagcgacag 446
           ||||||||||||||||||||||||||
Sbjct: 621 gacacccagctagatgttagcgacag 646


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 446
Length of database: 846
Length adjustment: 10
Effective length of query: 436
Effective length of database: 836
Effective search space:   364496
Effective search space used:   364496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)