Query= MSMg01no119_f24.b1 MSMg01no119_f24.b1 CHROMAT_FILE:
MSMg01no119_f24.b1 PHD_FILE: MSMg01no119_f24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:26:30 2005
(667 letters)
>mm_chr6_29999726_30000793
Length = 1068
Score = 1266 bits (655), Expect = 0.0
Identities = 664/667 (99%), Gaps = 1/667 (0%)
Strand = Plus / Plus
Query: 2 ggaattcgactgttg-ttaccattgggtacctaacccacatcgaaacaaaacaatagtct 60
||||||||||||||| | || |||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ggaattcgactgttgctaacaattgggtacctaacccacatcgaaacaaaacaatagtct 261
Query: 61 tttagcccactttatttaaaatcttgatttcattataatctcaaactcagcatacagaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tttagcccactttatttaaaatcttgatttcattataatctcaaactcagcatacagaag 321
Query: 121 gggagaagaatttttgtctactagtgagtggtttatattctcatttaaccagaaccagcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gggagaagaatttttgtctactagtgagtggtttatattctcatttaaccagaaccagcc 381
Query: 181 aactcaaattaggtgttttcacaaaaataccggaattatagaaggattataaaagggatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 aactcaaattaggtgttttcacaaaaataccggaattatagaaggattataaaagggatt 441
Query: 241 tccatttccctcgacactcatacatatttcagtgggacctaaggttgtgggttttctgtt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tccatttccctcgacactcatacatatttcagtgggacctaaggttgtgggttttctgtt 501
Query: 301 ttattaaggtataattacacacccgttgctaatttagttagggaggtgaaggccaacaat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ttattaaggtataattacacacccgttgctaatttagttagggaggtgaaggccaacaat 561
Query: 361 cctgtgatttaaatttgtgaattgtctttgctgatgtactacatttttaaccagacctgg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 cctgtgatttaaatttgtgaattgtctttgctgatgtactacatttttaaccagacctgg 621
Query: 421 cttgtctgtacaaagcattttataggaaacaaaagcaagcatgtaccttttaagggaaaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 cttgtctgtacaaagcattttataggaaacaaaagcaagcatgtaccttttaagggaaaa 681
Query: 481 ttaaggttcttgtgtgtgtatgtatatatatattgacaatgtgtagccttggttatcctg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 ttaaggttcttgtgtgtgtatgtatatatatattgacaatgtgtagccttggttatcctg 741
Query: 541 aaacttgccttgtagatcagactggcctcaaaggatctgcctgcctctgcctctagagtg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 aaacttgccttgtagatcagactggcctcaaaggatctgcctgcctctgcctctagagtg 801
Query: 601 ctgggactaaaggtgtgtaccactccacccagctggcattttatatctttttatttgcaa 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 ctgggactaaaggtgtgtaccactccacccagctggcattttatatctttttatttgcaa 861
Query: 661 taagaca 667
|||||||
Sbjct: 862 taagaca 868
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1068
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1058
Effective search space: 695106
Effective search space used: 695106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no119_f24.g1 MSMg01no119_f24.g1 CHROMAT_FILE:
MSMg01no119_f24.g1 PHD_FILE: MSMg01no119_f24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:26:30 2005
(564 letters)
>mm_chr6_30130317_30131280
Length = 964
Score = 859 bits (444), Expect = 0.0
Identities = 450/452 (99%)
Strand = Plus / Minus
Query: 113 agtttccagagccatttggtctgtctgaagtggtgggtttcttcaacatgtgtcctcatg 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 964 agtttccagagccatttggtctgtctgaagtggtgggtttcttcaacatgtgtcctcatg 905
Query: 173 tctgtaggacaatgtgagcttaaaggcccacacagtttctggtgtgtagtagaattcaag 232
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 904 tctgtaggacaatgtgagcttaaagacccacacagtttctggtgtgtagtagaattcaag 845
Query: 233 gactggacgattcaacgcctgtgaggctgtagtaattcaatgcctcctctgagcctcagt 292
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 844 gactggacgattcaacgcctgggaggctgtagtaattcaatgcctcctctgagcctcagt 785
Query: 293 ttccccatttgaaaaataggcagaaggcctccctcttctcagaggggataaacagaatgt 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 ttccccatttgaaaaataggcagaaggcctccctcttctcagaggggataaacagaatgt 725
Query: 353 actggtgagcaagtgcatccaagaatcccctccaggtcaggccctgcgtcatcagcacct 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 actggtgagcaagtgcatccaagaatcccctccaggtcaggccctgcgtcatcagcacct 665
Query: 413 tcagacagctagcacagcacagcccctgtagcccagctgtctgctccaagactacagcac 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 tcagacagctagcacagcacagcccctgtagcccagctgtctgctccaagactacagcac 605
Query: 473 atctcttcaatgtgtcttggaaaaggaagctggggggctgaaggaaaaccaacactggaa 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 atctcttcaatgtgtcttggaaaaggaagctggggggctgaaggaaaaccaacactggaa 545
Query: 533 aaacaggtctgattccagggctttcttctagt 564
||||||||||||||||||||||||||||||||
Sbjct: 544 aaacaggtctgattccagggctttcttctagt 513
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 964
Length adjustment: 10
Effective length of query: 554
Effective length of database: 954
Effective search space: 528516
Effective search space used: 528516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|