BAC Information

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BAC

Clone NameMSMg01-119F24
Chromosome6 (Build37)
Map Location 29,999,927 - 30,131,280
singlet/doubletdoublet
Overlap geneNrf1
Upstream geneLep, Rbm28, D330027H18Rik, Impdh1, 2310016C08Rik, AI507611, BC048651, Calu, Opn1sw, 4921511K06Rik, Flnc, Atp6v1f, EG668210, Crim2, Irf5, Tnpo3, Tspan33, Smo, 4631427C17Rik, D330017J20Rik, 1700023L04Rik, 1700080G18Rik
Downstream geneUbe2h, Zc3hc1, 2410127E18Rik, 2700094F01Rik, 1700025E21Rik, Cpa2, Cpa4, Cpa5, Cpa1, Tsga14, Mest, Copg2, Copg2, Tsga13, Klf14, LOC100038973, AB041803
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-119F24.T7 (MSMg01no119_f24.b1)MSMg01-119F24.TJ (MSMg01no119_f24.g1)
ACCAG330011AG330012
length722721
length of high quality
(start - end)
667 (42 - 708)564 (71 - 634)
definitionCHROMAT_FILE: MSMg01no119_f24.b1 PHD_FILE: MSMg01no119_f24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:26:30 2005CHROMAT_FILE: MSMg01no119_f24.g1 PHD_FILE: MSMg01no119_f24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:26:30 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,999,927 - 30,000,593)(30,130,829 - 30,131,280)
sequence
AAATTTGCGGCCGTATACGACTCCTATAGTTCGAGAATCCGCGGAATTCG
ACTGTTGTTACCATTGGGTACCTAACCCACATCGAAACAAAACAATAGTC
TTTTAGCCCACTTTATTTAAAATCTTGATTTCATTATAATCTCAAACTCA
GCATACAGAAGGGGAGAAGAATTTTTGTCTACTAGTGAGTGGTTTATATT
CTCATTTAACCAGAACCAGCCAACTCAAATTAGGTGTTTTCACAAAAATA
CCGGAATTATAGAAGGATTATAAAAGGGATTTCCATTTCCCTCGACACTC
ATACATATTTCAGTGGGACCTAAGGTTGTGGGTTTTCTGTTTTATTAAGG
TATAATTACACACCCGTTGCTAATTTAGTTAGGGAGGTGAAGGCCAACAA
TCCTGTGATTTAAATTTGTGAATTGTCTTTGCTGATGTACTACATTTTTA
ACCAGACCTGGCTTGTCTGTACAAAGCATTTTATAGGAAACAAAAGCAAG
CATGTACCTTTTAAGGGAAAATTAAGGTTCTTGTGTGTGTATGTATATAT
ATATTGACAATGTGTAGCCTTGGTTATCCTGAAACTTGCCTTGTAGATCA
GACTGGCCTCAAAGGATCTGCCTGCCTCTGCCTCTAGAGTGCTGGGACTA
AAGGTGTGTACCACTCCACCCAGCTGGCATTTTATATCTTTTTATTTGCA
ATAAGACATTTAGGAAATGTTG
ATGAAGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTGTGGTCAAACCCACAAAGGCTCCACAGGT
AAGATTAAGGTCCAAGGTGGGTTGTCCCCACTGACTGGCTCTATTGCAGG
GCCCAACCATCCTCAGTCATGCAACTGCTGGAAGTTTCCAGAGCCATTTG
GTCTGTCTGAAGTGGTGGGTTTCTTCAACATGTGTCCTCATGTCTGTAGG
ACAATGTGAGCTTAAAGGCCCACACAGTTTCTGGTGTGTAGTAGAATTCA
AGGACTGGACGATTCAACGCCTGTGAGGCTGTAGTAATTCAATGCCTCCT
CTGAGCCTCAGTTTCCCCATTTGAAAAATAGGCAGAAGGCCTCCCTCTTC
TCAGAGGGGATAAACAGAATGTACTGGTGAGCAAGTGCATCCAAGAATCC
CCTCCAGGTCAGGCCCTGCGTCATCAGCACCTTCAGACAGCTAGCACAGC
ACAGCCCCTGTAGCCCAGCTGTCTGCTCCAAGACTACAGCACATCTCTTC
AATGTGTCTTGGAAAAGGAAGCTGGGGGGCTGAAGGAAAACCAACACTGG
AAAAACAGGTCTGATTCCAGGGCTTTCTTCTAGTCCCCAGTTTGCAGATG
TGGAACCTGTCCACAGCCCATGCCTAGGACAATGGAGACTACAAAGAAAA
AAAGCACGTGTGGGGGGGGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no119_f24.b1 MSMg01no119_f24.b1 CHROMAT_FILE:
MSMg01no119_f24.b1 PHD_FILE: MSMg01no119_f24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:26:30 2005
         (667 letters)



>mm_chr6_29999726_30000793
          Length = 1068

 Score = 1266 bits (655), Expect = 0.0
 Identities = 664/667 (99%), Gaps = 1/667 (0%)
 Strand = Plus / Plus

                                                                       
Query: 2   ggaattcgactgttg-ttaccattgggtacctaacccacatcgaaacaaaacaatagtct 60
           ||||||||||||||| | || |||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ggaattcgactgttgctaacaattgggtacctaacccacatcgaaacaaaacaatagtct 261

                                                                       
Query: 61  tttagcccactttatttaaaatcttgatttcattataatctcaaactcagcatacagaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tttagcccactttatttaaaatcttgatttcattataatctcaaactcagcatacagaag 321

                                                                       
Query: 121 gggagaagaatttttgtctactagtgagtggtttatattctcatttaaccagaaccagcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gggagaagaatttttgtctactagtgagtggtttatattctcatttaaccagaaccagcc 381

                                                                       
Query: 181 aactcaaattaggtgttttcacaaaaataccggaattatagaaggattataaaagggatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 aactcaaattaggtgttttcacaaaaataccggaattatagaaggattataaaagggatt 441

                                                                       
Query: 241 tccatttccctcgacactcatacatatttcagtgggacctaaggttgtgggttttctgtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tccatttccctcgacactcatacatatttcagtgggacctaaggttgtgggttttctgtt 501

                                                                       
Query: 301 ttattaaggtataattacacacccgttgctaatttagttagggaggtgaaggccaacaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ttattaaggtataattacacacccgttgctaatttagttagggaggtgaaggccaacaat 561

                                                                       
Query: 361 cctgtgatttaaatttgtgaattgtctttgctgatgtactacatttttaaccagacctgg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 cctgtgatttaaatttgtgaattgtctttgctgatgtactacatttttaaccagacctgg 621

                                                                       
Query: 421 cttgtctgtacaaagcattttataggaaacaaaagcaagcatgtaccttttaagggaaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 cttgtctgtacaaagcattttataggaaacaaaagcaagcatgtaccttttaagggaaaa 681

                                                                       
Query: 481 ttaaggttcttgtgtgtgtatgtatatatatattgacaatgtgtagccttggttatcctg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 ttaaggttcttgtgtgtgtatgtatatatatattgacaatgtgtagccttggttatcctg 741

                                                                       
Query: 541 aaacttgccttgtagatcagactggcctcaaaggatctgcctgcctctgcctctagagtg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 aaacttgccttgtagatcagactggcctcaaaggatctgcctgcctctgcctctagagtg 801

                                                                       
Query: 601 ctgggactaaaggtgtgtaccactccacccagctggcattttatatctttttatttgcaa 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 ctgggactaaaggtgtgtaccactccacccagctggcattttatatctttttatttgcaa 861

                  
Query: 661 taagaca 667
           |||||||
Sbjct: 862 taagaca 868


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1068
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1058
Effective search space:   695106
Effective search space used:   695106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no119_f24.g1 MSMg01no119_f24.g1 CHROMAT_FILE:
MSMg01no119_f24.g1 PHD_FILE: MSMg01no119_f24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:26:30 2005
         (564 letters)



>mm_chr6_30130317_30131280
          Length = 964

 Score =  859 bits (444), Expect = 0.0
 Identities = 450/452 (99%)
 Strand = Plus / Minus

                                                                       
Query: 113 agtttccagagccatttggtctgtctgaagtggtgggtttcttcaacatgtgtcctcatg 172
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 964 agtttccagagccatttggtctgtctgaagtggtgggtttcttcaacatgtgtcctcatg 905

                                                                       
Query: 173 tctgtaggacaatgtgagcttaaaggcccacacagtttctggtgtgtagtagaattcaag 232
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 904 tctgtaggacaatgtgagcttaaagacccacacagtttctggtgtgtagtagaattcaag 845

                                                                       
Query: 233 gactggacgattcaacgcctgtgaggctgtagtaattcaatgcctcctctgagcctcagt 292
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 844 gactggacgattcaacgcctgggaggctgtagtaattcaatgcctcctctgagcctcagt 785

                                                                       
Query: 293 ttccccatttgaaaaataggcagaaggcctccctcttctcagaggggataaacagaatgt 352
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 ttccccatttgaaaaataggcagaaggcctccctcttctcagaggggataaacagaatgt 725

                                                                       
Query: 353 actggtgagcaagtgcatccaagaatcccctccaggtcaggccctgcgtcatcagcacct 412
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 actggtgagcaagtgcatccaagaatcccctccaggtcaggccctgcgtcatcagcacct 665

                                                                       
Query: 413 tcagacagctagcacagcacagcccctgtagcccagctgtctgctccaagactacagcac 472
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 tcagacagctagcacagcacagcccctgtagcccagctgtctgctccaagactacagcac 605

                                                                       
Query: 473 atctcttcaatgtgtcttggaaaaggaagctggggggctgaaggaaaaccaacactggaa 532
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 atctcttcaatgtgtcttggaaaaggaagctggggggctgaaggaaaaccaacactggaa 545

                                           
Query: 533 aaacaggtctgattccagggctttcttctagt 564
           ||||||||||||||||||||||||||||||||
Sbjct: 544 aaacaggtctgattccagggctttcttctagt 513


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 964
Length adjustment: 10
Effective length of query: 554
Effective length of database: 954
Effective search space:   528516
Effective search space used:   528516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)