Query= MSMg01no119_o14.b1 MSMg01no119_o14.b1 CHROMAT_FILE:
MSMg01no119_o14.b1 PHD_FILE: MSMg01no119_o14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:11 2005
(666 letters)
>mm_chr6_45150547_45151611
Length = 1065
Score = 1181 bits (611), Expect = 0.0
Identities = 650/663 (98%), Gaps = 3/663 (0%)
Strand = Plus / Minus
Query: 5 gaattctacaggtatgccatcatataatactcattctttatgtggagcaagagtgtaggt 64
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 gaattctacaggtaaggcatcatataatactcattctttatgtggagcaagagtgtaggt 806
Query: 65 atggatggacatgagaaggtctgctgtgacatggaagccactgctgtgctgtgttgctca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 atggatggacatgagaaggtctgctgtgacatggaagccactgctgtgctgtgttgctca 746
Query: 125 ggtatctctcaaccttaaggcacaaagctaactattcattaacatggtcaaaaaaccaac 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 745 ggtatctctcaaccttaaggcacaaagctaactattcattaacatggtcaaaaaagcaac 686
Query: 185 tgcaaccactgggagggtgcacagatttacttagaatcagttatttaaatacatataaaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tgcaaccactgggagggtgcacagatttacttagaatcagttatttaaatacatataaaa 626
Query: 245 gtccagtagttgcttaatgaagcatttttcttctattacataattattgcagaaagaatt 304
|||||| ||||| |||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct: 625 gtccagaagttgtttaatgaaacatttttcttctaatacataattattgcagaaagaatt 566
Query: 305 caagtgtaagacatatgaaatgtcattgctctttatgaattatattcacaatcacattcc 364
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 565 caagtgtaagacatatgaaatgtcattgctctttatgaattatattcacgatcacattcc 506
Query: 365 caaaaccaaccaaaaattgtagcagtataaaatttcaaatccaatattatcacttttata 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 caaaaccaaccaaaaattgtagcagtataaaatttcaaatccaatattatcacttttata 446
Query: 425 tcctt-cctttccatgtacttgttagcacaaacaatattattaccactgccacatttctt 483
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tccttcccttt-catgtacttgttagcacaaacaatattattaccactgccacatttctt 387
Query: 484 aacacatcacttatgctctttttaggatgtgttcccttctaaattttgcccattttcagt 543
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 aacacgtcacttatgctctttttaggatgtgttcccttctaaattttgcccattttcagt 327
Query: 544 tctcttgtctctgtatagcactgttttcactagcatccagaaggtgttgtctttaaaggc 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tctcttgtctctgtatagcactgttttcactagcatccagaaggtgttgtctttaaaggc 267
Query: 604 tactggctttagcaacttggtaagcattgtatcttcaaattagcattttttttctctcct 663
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct: 266 tactggctttagcaacttggtaagcattatatcttcaaattagcattttttt-ctctcct 208
Query: 664 tac 666
|||
Sbjct: 207 tac 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1065
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1055
Effective search space: 692080
Effective search space used: 692080
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no119_o14.g1 MSMg01no119_o14.g1 CHROMAT_FILE:
MSMg01no119_o14.g1 PHD_FILE: MSMg01no119_o14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:11 2005
(342 letters)
>mm_chr6_45045422_45046162
Length = 741
Score = 555 bits (287), Expect = e-162
Identities = 330/353 (93%), Gaps = 15/353 (4%)
Strand = Plus / Plus
Query: 1 tcaatatgaggttaattacacagcaatgaaagaataaacctattgaaaaaatttgctgag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 tcaatatgaggttaattacacagcaatgaaagaataaacctattgaaaaaatttgctgag 246
Query: 61 tatcatggtttcaattcaattccctttcatggaggtttggatgtgttcctgttttttgtt 120
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 247 tatcatggtttcaattcaatttcctttcatggaggtttggatgtgttcctgttttttgtt 306
Query: 121 ttttg--------------ttttttgttttttgtttttatttttgtttttttaagacgct 166
||||| ||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 307 ttttggtttttgttttttgttttttgttttttgtttttgtttttgtttttttaagatgct 366
Query: 167 agaaaactcacaagaaagagaatgcctttcaaattaatgtgcactgatagataacatttc 226
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 agaaaattcacaagaaagagaatgcctttcaaattaatgtgcactgatagataacatttc 426
Query: 227 atcctttgtcaatgtgcttattaaaaacaacaaaatcatacacaataactatagcacaaa 286
||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 427 atcctttgtcaatatgccgag-aaaaacaacaaaatcatacacaataactatagcacaaa 485
Query: 287 agcagccatcaaaaattagtgatgtatttaagttaatgtggaattctcatgat 339
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 agcagccatcaaaaattagtgatgtatttaagttaatgtggaattctcatgat 538
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 741
Length adjustment: 9
Effective length of query: 333
Effective length of database: 732
Effective search space: 243756
Effective search space used: 243756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
