BAC Information

Click to search

BAC

Clone NameMSMg01-120L08
Chromosome6 (Build37)
Map Location 81,375,964 - 81,376,475
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043390, LOC100042991
Downstream geneLOC232143, 1700009C05Rik, AW146020, Mrpl19, Tmem166, EG622198, Tacr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-120L08.T7 (MSMg01no120_l08.b1)MSMg01-120L08.TJ (MSMg01no120_l08.g1)
ACCAG331008AG331009
length707692
length of high quality
(start - end)
460 (43 - 502)512 (59 - 570)
definitionCHROMAT_FILE: MSMg01no120_l08.b1 PHD_FILE: MSMg01no120_l08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:28:14 2005CHROMAT_FILE: MSMg01no120_l08.g1 PHD_FILE: MSMg01no120_l08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:28:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAAAGAGGATCCGCGGA
ATTCTTTGTTTTCTCCATCTATGGTAATTGAGAATTTGGCTGTGTATAGT
GGCCTGGGCTGGAATTTGTGTTCTCTTAGTGTATGTATAACATCTGTCCA
GGCTCTTCTGGCTTTCATAGTCTCTGGTGAAAAATCGGGTGTAATTCTAA
TAGGCTTGCCTTTATATGTTACTTGACCTTTTTCCCTTACTGCTTTTAGC
ATTCTATCTTTATTTAGTGCATTTATTGTTCTGATTATTATGTGTTGGGA
GGAATTTCTTTTCTGGTTCATTCTATTTGGAGTTCTGTAGGCTTCTAGAA
TGTTCATGGGCATCTCTTTCTTTAGGTTTGGGAAGTTTTCTTCTATAATT
TTGCTGAAGATATTTGCCAGTCCTTTGAGTTGAAAATCTTCATTCTCATC
GTCTCCTATTATCCGTAGTTTTGGACTTCTCATTGTTTCCTGGATTTCTT
GGATGTTTTGAGTTAGGATCTTTTTGCATCTTCCATTTTCTTTGATTGTT
GTGCCAATGTTCTCTTTGGAACCTTCTGCACCTGAGATTCTCTCTTCCAT
ATCTTTTATTCTGTCGATGATGCTCACTTCTATGGTTCCAGATTTCGTTT
TCTACGTTTCTATCTCCAGCATTGGCTCACTTTGTGGTTTCCTCATTGTG
CCTACCT
GGCGGCCGCTGTTCCGCACAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
AGGCCAGAGTATATTTGATTCGAACATACTTGGAAATGGTTATAGATGTT
GAAGAATGTGATAAGTATGGGGTCTTATTTTGCGAGTGCTATCTAGGAGC
CAGCAGAAGGTGGAAGAAGCTCGGAACCTAATGCAGCTTTCACAGTCCTT
CAGAAGTAAGCTGGCATCTGAGACTGCAGCTTTGGAGTATAAAGCATGGC
TACAGACAGGGGTACATTTGAAAGGGGAAAGAGAAAGAAGAAATTGAAAT
ACAGAGGATATGTCATAGTCTATGTAACCCTAAAGAGAGGACTGAGAGGA
CGTTAAACACTTCCCAGTTCATTTTTTCTCTGACTTCCCATAGCTCTAAA
TGTGTGGCAGCTTGCCTTCACCCTGCTGTAGACCAATCTAAACAGCTGAA
TAGCAGATTCAAGCACACAATCAGACCTGTAGATTCTTGGTCTGGGCTTT
CTGCCCCTTTCTTTACATATCCAAGTTTCTTTCATATCAATGCTAGAATC
AGGACCCTTTGCTGACAGTCCTGTATACATCAGACAACTATGGGCTCCCC
ACACACCCATGAATGACTAATTCAAGTTCTGGTTCTCCAGTGATGTCCCT
CTTGCCCTTCTCATTGTTGAGACGCCGGCCTAAGGACAAGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no120_l08.g1 MSMg01no120_l08.g1 CHROMAT_FILE:
MSMg01no120_l08.g1 PHD_FILE: MSMg01no120_l08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:28:15 2005
         (512 letters)



>mm_chr6_81375763_81376675
          Length = 913

 Score =  959 bits (496), Expect = 0.0
 Identities = 508/512 (99%), Gaps = 1/512 (0%)
 Strand = Plus / Plus

                                                                       
Query: 2   tatatttgattcgaacatac-ttggaaatggttatagatgttgaagaatgtgataagtat 60
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 202 tatatttgattcgaacatacattggaaatggttatagatgttgaagaatgtgataagtat 261

                                                                       
Query: 61  ggggtcttattttgcgagtgctatctaggagccagcagaaggtggaagaagctcggaacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ggggtcttattttgcgagtgctatctaggagccagcagaaggtggaagaagctcggaacc 321

                                                                       
Query: 121 taatgcagctttcacagtccttcagaagtaagctggcatctgagactgcagctttggagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 taatgcagctttcacagtccttcagaagtaagctggcatctgagactgcagctttggagt 381

                                                                       
Query: 181 ataaagcatggctacagacaggggtacatttgaaaggggaaagagaaagaagaaattgaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ataaagcatggctacagacaggggtacatttgaaaggggaaagagaaagaagaaattgaa 441

                                                                       
Query: 241 atacagaggatatgtcatagtctatgtaaccctaaagagaggactgagaggacgttaaac 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 442 atacagaggatatgtcatagtctatgtaaccctaaagagaggactgagaggatgttaaac 501

                                                                       
Query: 301 acttcccagttcattttttctctgacttcccatagctctaaatgtgtggcagcttgcctt 360
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 502 acttcccagttcattttttctctgacttcccatagctctaaatgtgtgtcagcttgcctt 561

                                                                       
Query: 361 caccctgctgtagaccaatctaaacagctgaatagcagattcaagcacacaatcagacct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 caccctgctgtagaccaatctaaacagctgaatagcagattcaagcacacaatcagacct 621

                                                                       
Query: 421 gtagattcttggtctgggctttctgcccctttctttacatatccaagtttctttcatatc 480
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 622 gtagattcttggtctgggctttctgcccctttctttacatatctaagtttctttcatatc 681

                                           
Query: 481 aatgctagaatcaggaccctttgctgacagtc 512
           ||||||||||||||||||||||||||||||||
Sbjct: 682 aatgctagaatcaggaccctttgctgacagtc 713


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 913
Length adjustment: 10
Effective length of query: 502
Effective length of database: 903
Effective search space:   453306
Effective search space used:   453306
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)