BAC Information

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BAC

Clone NameMSMg01-120L10
Chromosome6 (Build37)
Map Location 139,663,749 - 139,664,049
singlet/doubletsinglet
Overlap genenone
Upstream geneEG668196, EG632971, LOC100043898
Downstream genePik3c2g, Plcz1, Capza3, LOC100042680, LOC100039020, LOC269810, Plekha5, Aebp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-120L10.T7 (MSMg01no120_l10.b1)MSMg01-120L10.TJ (MSMg01no120_l10.g1)
ACCAG331012AG331013
length718665
length of high quality
(start - end)
475 (69 - 543)297 (55 - 351)
definitionCHROMAT_FILE: MSMg01no120_l10.b1 PHD_FILE: MSMg01no120_l10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:28:15 2005CHROMAT_FILE: MSMg01no120_l10.g1 PHD_FILE: MSMg01no120_l10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:28:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAAAGAGGATCCGCG
GAATTCTCATTTCCCGAATACCGAATGGCAGAGAAGCACTTGAAAAAATG
TTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGAT
TCCACCTCACACCAATCAGAATGGCTAAGATCAAAAATTCAGGTGACAGC
AGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTG
GGAGTGCAGGCTTGTACAACCACTCTGCAAATCAGTCTGGCGGTTCCTCA
GAAAATTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGC
ATATATCCAGAAGATGCCCCAACAGGTAAGAAGGACACATGCTCCACTAT
GTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCTAGAT
GCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATG
GAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAA
ATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACTAA
GAAACTCACTACATATGTATTCCCTGATAAGTGGACATTAGCCCCAAACC
TAGGATACCCAAGATATTAGATATAATTTGCTAAACTCATGAAACTCAAG
AAAAATGAAGACTTGAAG
GCCTGTCCTACAATTTAGGTGAACTATAGAATATCCCGGGATTCCCATTT
CCAGAAAGACATAAATATAGTCGTCATGTTGTGGATGTGATTACAAATGA
CAAAGAGGAGAATGCAAAAAATAACATTTCAGATTGTGGTTTTGATCTGT
GATTTGATTTAATATATTTTCCTCACCGTTCAACTATAAGTTAATTAATG
CTCAATAAAACCATAAAACCAAAGAGAGTATCTATATAGTTCTGATCACA
CTTCATCCAGACCCCTTTAGGATGTACTTCAAAGCTGGGTCTGAGTATCT
GCTAATAATAAGAGAAAGGCAGTGAACGCCGAGCATTTGAAATGCACTTA
GAACAGAAGATTGTTTCCTGTCATGGTGGAGAGACGGAGCTTGACAAGGA
CTGCAGGGAGCTTTAATACTGAAAGGCCAATTTGAGCAAAGTCTTTTTAA
AAACTCTAATAACCTACATTACTCACTGCAATATCCAGAAAGATTTCTTA
TTAGACTCTATAGATTTCCAGCGTTTAATCTGCAACACAGATAAATAAAC
TGAGAAACACTTGTATCGCTTTCTCATCCCAGAAAAAGATCATATGTTGA
TTTTTTTGGATATTAGGACTTTGAATATTTCCTGGATTAGAAAACAAACG
CATCTCTTTTTCATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no120_l10.g1 MSMg01no120_l10.g1 CHROMAT_FILE:
MSMg01no120_l10.g1 PHD_FILE: MSMg01no120_l10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:28:15 2005
         (297 letters)



>mm_chr6_139663552_139664249
          Length = 698

 Score =  543 bits (281), Expect = e-159
 Identities = 295/301 (98%), Gaps = 4/301 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaagacataaa---tatagtcgtcatgttgtggatgtgattacaaatgacaaagaggaga 57
           |||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 aaagacataaaaaatatagtcgtcatgttgtggatgtgattacaaatgacaaagaggaga 257

                                                                       
Query: 58  atgcaaaaaa-taacatttcagattgtggttttgatctgtgatttgatttaatatatttt 116
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 atgcaaaaaaataacatttcagattgtggttttgatctgtgatttgatttaatatatttt 317

                                                                       
Query: 117 cctcaccgttcaactataagttaattaatgctcaataaaaccataaaaccaaagagagta 176
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 318 cctcaccgttcaactataagttaattaatgctcaataaaatcataaaaccaaagagagta 377

                                                                       
Query: 177 tctatatagttctgatcacacttcatccagacccctttaggatgtacttcaaagctgggt 236
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 378 tctatatagttctgatcacacttcatccagagccctttaggatgtacttcaaagctgggt 437

                                                                       
Query: 237 ctgagtatctgctaataataagagaaaggcagtgaacgccgagcatttgaaatgcactta 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 ctgagtatctgctaataataagagaaaggcagtgaacgccgagcatttgaaatgcactta 497

            
Query: 297 g 297
           |
Sbjct: 498 g 498


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 297
Length of database: 698
Length adjustment: 9
Effective length of query: 288
Effective length of database: 689
Effective search space:   198432
Effective search space used:   198432
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)