Query= MSMg01no121_c04.b1 MSMg01no121_c04.b1 CHROMAT_FILE:
MSMg01no121_c04.b1 PHD_FILE: MSMg01no121_c04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:28:49 2005
(485 letters)
>mm_chr6_83756328_83757210
Length = 883
Score = 853 bits (441), Expect = 0.0
Identities = 471/481 (97%), Gaps = 2/481 (0%)
Strand = Plus / Plus
Query: 5 gaattccaaggaaaaacaaaaaacccaaaacttttttgtaattggggctgagtctgtagt 64
|||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||
Sbjct: 205 gaattccaaggaaaaa-aaacaacccaaaacttttttgtaattggggctaagtctgtagt 263
Query: 65 ctcgggtacaattcgcgcttcctcacaacactggatagtaaaagagttgggtcacaggaa 124
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctcgggtacaatt-gtgcttcctcacaacactggatagtaaaagagttgggtcacaggaa 322
Query: 125 taagtcattccatacattactaagggccagttcactggctgcatcccaagcctacagtca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 taagtcattccatacattactaagggccagttcactggctgcatcccaagcctacagtca 382
Query: 185 gcaccctgcctctgaggttgactcaacacactagctcttggattccaggtatacccaaca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gcaccctgcctctgaggttgactcaacacactagctcttggattccaggtatacccaaca 442
Query: 245 acatacacccctgaaagcaggatagagaatgacatccaaataaaatgagccagcacagcg 304
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 443 gcatacacccctgaaagcaggataaagaatgacatccaaataaaatgagccagcacagcg 502
Query: 305 ggagggaggcaggtctcttggaccattcctagcagcttggcttccaaagagcaaaactga 364
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ggagggaggcaggcctcttggaccattcctagcagcttggcttccaaagagcaaaactga 562
Query: 365 aggatggaacaaagctgcctcaggcttgcataagcttcccataggtgctcagaggaaggt 424
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 563 aggatggaacaaagctgcctcaggcttgcataagctttccataggtgctcagaggaaggt 622
Query: 425 gcactacgcagacagagattctgaaggatcttcctgcaatcctgatacagcctgacctca 484
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 gcactacgcaaacagagattctgaaggatcttcctgcaatcctgatacagcctgacctca 682
Query: 485 t 485
|
Sbjct: 683 t 683
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 883
Length adjustment: 10
Effective length of query: 475
Effective length of database: 873
Effective search space: 414675
Effective search space used: 414675
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no121_c04.g1 MSMg01no121_c04.g1 CHROMAT_FILE:
MSMg01no121_c04.g1 PHD_FILE: MSMg01no121_c04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:28:49 2005
(557 letters)
>mm_chr6_83829599_83830555
Length = 957
Score = 1036 bits (536), Expect = 0.0
Identities = 551/556 (99%)
Strand = Plus / Minus
Query: 1 actcagcaatattgctctttatttatttactgcagtgttatttatctacccaagggtaat 60
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 612 actcagcaatattgctctttatttatttactgcagtgttatttatctaagcaagggtaat 553
Query: 61 gccttgcaaaaactggccagaacaagcgttaggacttaatccataaattctgaaagggat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 gccttgcaaaaactggccagaacaagcgttaggacttaatccataaattctgaaagggat 493
Query: 121 attcttaaaacttttactttcatcagggcagcatcagatcttttccaaggcgcctttaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 attcttaaaacttttactttcatcagggcagcatcagatcttttccaaggcgcctttaaa 433
Query: 181 aaagtattttagagttctgtcgccaccttgtggtgctttgttgtagtattgaactgaaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 aaagtattttagagttctgtcgccaccttgtggtgctttgttgtagtattgaactgaaaa 373
Query: 241 ctcatttcagaatctagggaaaaggtcaaagctgattaattgtaagactgatgttttatc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ctcatttcagaatctagggaaaaggtcaaagctgattaattgtaagactgatgttttatc 313
Query: 301 tgctttttataattttgatcactttctattggcatgtgaatttatctgcatcattttaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 tgctttttataattttgatcactttctattggcatgtgaatttatctgcatcattttaaa 253
Query: 361 aagcaaagtgacaaaactgaacacatccgtctattattgaaatactaggtgtctggagag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 aagcaaagtgacaaaactgaacacatccgtctattattgaaatactaggtgtctggagag 193
Query: 421 atggctcagtggttaagagcactgactgctcttctaaaggtcctgagttcaattccaagc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 atggctcagtggttaagagcactgactgctcttctaaaggtcctgagttcaattccaagc 133
Query: 481 aaccacatggtggctcacaaccatctgtaatgggatctgatgccctcttctggggtgtct 540
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct: 132 aaccacatggtggctcacaactatctgcaatgggatctgatgccctcttctggggtgtct 73
Query: 541 aaagacagcaccagtg 556
||||||||| ||||||
Sbjct: 72 aaagacagcgccagtg 57
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 957
Length adjustment: 10
Effective length of query: 547
Effective length of database: 947
Effective search space: 518009
Effective search space used: 518009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
