BAC Information

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BAC

Clone NameMSMg01-121L07
Chromosome6 (Build37)
Map Location 12,632,740 - 12,633,025
singlet/doubletsinglet
Overlap geneThsd7a
Upstream geneNdufa4, Phf14, LOC100040844, EG625347, LOC435879
Downstream geneLOC667735, LOC384350, Tmem106b, Gm467, Gm725, 1700016P04Rik, LOC100040478, Tmem168, B630005N14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-121L07.T7 (MSMg01no121_l07.b1)MSMg01-121L07.TJ (MSMg01no121_l07.g1)
ACCAG331751AG331752
length710709
length of high quality
(start - end)
69 (65 - 133)289 (63 - 351)
definitionCHROMAT_FILE: MSMg01no121_l07.b1 PHD_FILE: MSMg01no121_l07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:34 2005CHROMAT_FILE: MSMg01no121_l07.g1 PHD_FILE: MSMg01no121_l07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGCGCCGCTAATACACTCCTATATGCAGAGGATCCGCGGAATTCCTTAAT
CTATCCTTCGCTTCTTCCCTTAAAAGCTTTGGAAATAATCGTTGTATCTT
CGGGCGCCTAAGTAGTTTTGAAAAGATGATTTCCACATAATGTAGTCTGT
CATTCTGCTGAAAGTGGAATCGGGGGAGCTACTTATGAGAATGTATATTC
AGCAAGATTTTGCTGAAGGGACCCTGATATAGACGTCTCGTAAGAGGCTA
TGCCAGTGCCTGGCAAATACAGAAGTGGATGCTCACAGTCATCTATAAGA
TGGAACACACGGCCCCCAATGGAGAAGCTAGGGAAAGCACCCAAGGAGAT
GAAGTAGTCTGTAACCCTCTACGCGGAACCACAATAGGAACTAACCAGTA
CCCCCAGAGCTCGTGTCTCTAGCTGCGTATGTAGCAGAAGATGGCCTAGC
TGGCCCATCATTGGGAAGAGAGGTCCCTTGGTCTTGCAAACTTTATATGC
CCCAGTACAGGGGAACGCCAGGGCCCAGAAATGGGAGTGGGTGGGTAGGG
CACCAGGCCGTCCCGCTGATGGCATAGGGAACCTTCCCGACACCCCCCGC
CCCGTCCCCTCCCCCCCTTTCCTATCGCCGCCCTCCCCCCCCCCCCCCGA
TTATGCCCTTTTCTCACGCCCTCCGGACGCACACCCTCGCCACCTTCCCA
CCTTCGACCG
GAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXATAATTTTATTAGGAAGCTTCAGAAATAAGAGAAGTTT
AACTAAGCACCTCAAAAGTCCATTCTGTAAGGCTGAAATAGAAGGAAGTA
AAGCTTAGGTTAAGCCCTTTTAGTAAAATTGAAATTAATAAAGCCTGCAC
TATGTTCTGTTCGCTAAAATATGCTTTTCTATAGCTCACATACATACTTT
GAAATACGTGCATACTATAAAAGTGAAGTTTAATTTCTGGTGGATCTTTT
TCTATTACCCATTCTTTAAAAGAAGATATACATTATTTAGCTGACATATT
TTTCAGTGTCTCACCACCGCCTCCCATCTCTCTCACCTTTTAGGGTCATT
ACTGACTTTCTGTAGAAGAACATACTTTCAAGTCATTATGTGGTACATTA
GGGCTTGACAAATTGCCCTCTTGAAATCCTTATTCTATTTTTATAGCTAT
TCCATTTGACTTAATGAGTTAGGAAAATTTACTTCACTTTACTTTAATTG
CTTTATTAGAAATGTTATATTTTCCAGAAGGCTGGAGCTGACAAACTGTC
TTTCTCAAGTCTCTTCTTGTTCCTACACTAATTAATTTACTACATTAGGT
AAGCCCTTTATTACTGAAAGTTATAATTTCTAAACCAAATAAGGAATGCG
TCCGAATCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no121_l07.g1 MSMg01no121_l07.g1 CHROMAT_FILE:
MSMg01no121_l07.g1 PHD_FILE: MSMg01no121_l07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:29:34 2005
         (289 letters)



>mm_chr6_12632540_12633228
          Length = 689

 Score =  545 bits (282), Expect = e-160
 Identities = 285/286 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ataattttattaggaagcttcagaaataagagaagtttaactaagcacctcaaaagtcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 ataattttattaggaagcttcagaaataagagaagtttaactaagcacctcaaaagtcca 427

                                                                       
Query: 61  ttctgtaaggctgaaatagaaggaagtaaagcttaggttaagcccttttagtaaaattga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 ttctgtaaggctgaaatagaaggaagtaaagcttaggttaagcccttttagtaaaattga 367

                                                                       
Query: 121 aattaataaagcctgcactatgttctgttcgctaaaatatgcttttctatagctcacata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 aattaataaagcctgcactatgttctgttcgctaaaatatgcttttctatagctcacata 307

                                                                       
Query: 181 catactttgaaatacgtgcatactataaaagtgaagtttaatttctggtggatctttttc 240
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 catactttgaaatatgtgcatactataaaagtgaagtttaatttctggtggatctttttc 247

                                                         
Query: 241 tattacccattctttaaaagaagatatacattatttagctgacata 286
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tattacccattctttaaaagaagatatacattatttagctgacata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)