Query= MSMg01no122_b07.b1 MSMg01no122_b07.b1 CHROMAT_FILE:
MSMg01no122_b07.b1 PHD_FILE: MSMg01no122_b07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:30:09 2005
(706 letters)
>mm_chr6_107677373_107678482
Length = 1110
Score = 1307 bits (676), Expect = 0.0
Identities = 700/710 (98%), Gaps = 4/710 (0%)
Strand = Plus / Minus
Query: 1 tgccatggtcaaatttctgcttctacaagtaagcattgtttactgtttatatgacagaca 60
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 760 tgccatggtcaaatttctgcttctacaagtaagtagtgtttactgtttatatgacagaca 701
Query: 61 ctaggactggtgttctatcaaatgtacgtttgatcctcacaacccatacagtgcagacac 120
|||||||||||| |||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct: 700 ctaggactggtgctctatcaaatgtacatttgatcctcacaacctatacagtgcagacac 641
Query: 121 tagcaatcttccaaccatcatgtgaagagattatgaggtatagaataagcatcgtgtcca 180
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 tagtaatcttccaaccatcatgtgaagagattatgaggtatagaataagcatcgtgtcca 581
Query: 181 tgttttcactacagctgcttcgtttcagtccatctgtctgactgtagaataggatcttat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 tgttttcactacagctgcttcgtttcagtccatctgtctgactgtagaataggatcttat 521
Query: 241 ccacttggtccagaatccactatttttgcatattcatgagtttgcattagccagtgatct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 ccacttggtccagaatccactatttttgcatattcatgagtttgcattagccagtgatct 461
Query: 301 ctacgaggttaagctctttgagagttgggcatcttgtgtttgactgtagtgtgttcccac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 ctacgaggttaagctctttgagagttgggcatcttgtgtttgactgtagtgtgttcccac 401
Query: 361 cctgttcagggcacttagttcatttaatacttagaaaattgccaggtttgggtcagctga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 cctgttcagggcacttagttcatttaatacttagaaaattgccaggtttgggtcagctga 341
Query: 421 tcac----tctgtgacactgagagagaagatgcctccatttgcatcctaccttaagcatc 476
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 tcactctgtctgtgacactgagagagaagatgcctccatttgcatcctaccttaagcatc 281
Query: 477 ttctgcctcttcacttttgcctcggggtttttaagcccctggagctcttagtgtaccttt 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 ttctgcctcttcacttttgcctcggggtttttaagcccctggagctcttagtgtaccttt 221
Query: 537 tacacagcacagaactaggagggagtaaataccctgggggcaatcctcaactaatggcaa 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 tacacagcacagaactaggagggagtaaataccctgggggcaatcctcaactaatggcaa 161
Query: 597 gtaggataaatgcctaggctccctggtcttcagaagtaattcttaggtggacttctcctg 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160 gtaggataaatgcctaggctccctggtcttcagaagtaattcttaggtggacttctcctg 101
Query: 657 ggcccttgagaattagcgtcagctgcactgagctccagttgaccacagtg 706
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 100 ggcccttgagaattagcgtcagctgcactgagctccagttgaccacagtg 51
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 706
Length of database: 1110
Length adjustment: 10
Effective length of query: 696
Effective length of database: 1100
Effective search space: 765600
Effective search space used: 765600
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no122_b07.g1 MSMg01no122_b07.g1 CHROMAT_FILE:
MSMg01no122_b07.g1 PHD_FILE: MSMg01no122_b07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:30:09 2005
(326 letters)
>mm_chr6_107517611_107518336
Length = 726
Score = 623 bits (322), Expect = 0.0
Identities = 325/326 (99%)
Strand = Plus / Plus
Query: 1 acctggaaattctcatgattggggaaaaccctgtgattggaatcctggacatgaatttca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 201 acctggaaattctcatgattggggaaaaccctgtgattggaatcctggacatgaacttca 260
Query: 61 gacctctctccaacctgagaagcctagtgttagcaggaatgtacctcactgatgttcccg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gacctctctccaacctgagaagcctagtgttagcaggaatgtacctcactgatgttcccg 320
Query: 121 gaaacgccttggtaggcttggatagcctcgagagcctgtctttctatgacaacaaactga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaaacgccttggtaggcttggatagcctcgagagcctgtctttctatgacaacaaactga 380
Query: 181 tcaaagtccctcaacttgccctgcaaaaagttccaaatttgaaatttttagacctcaata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcaaagtccctcaacttgccctgcaaaaagttccaaatttgaaatttttagacctcaata 440
Query: 241 aaaatcctattcacaaaatccaagaaggagactttaaaaatatgcttcggttaaaagaac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaaatcctattcacaaaatccaagaaggagactttaaaaatatgcttcggttaaaagaac 500
Query: 301 tgggaatcaacaacatgggagagctg 326
||||||||||||||||||||||||||
Sbjct: 501 tgggaatcaacaacatgggagagctg 526
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 326
Length of database: 726
Length adjustment: 9
Effective length of query: 317
Effective length of database: 717
Effective search space: 227289
Effective search space used: 227289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
