Query= MSMg01no122_c18.b1 MSMg01no122_c18.b1 CHROMAT_FILE:
MSMg01no122_c18.b1 PHD_FILE: MSMg01no122_c18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:30:21 2005
(784 letters)
>mm_chr6_5084103_5085285
Length = 1183
Score = 1415 bits (732), Expect = 0.0
Identities = 759/768 (98%), Gaps = 3/768 (0%)
Strand = Plus / Minus
Query: 18 ggaattctcttactccctaagaccttaa-aaggaaagcagtgctctaaggttgtgtgcct 76
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct: 983 ggaattctcttactccctaagacc-taagaaggaaagcagtgctctaaggttgtgtgcct 925
Query: 77 atgcgaaaaaaaaaaactagttttacaccatacacattgtgttattagtgatgccacatc 136
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 924 atgag-aaaaaaaaaactagttttacaccatacacattgtgttattagtgatgccacatc 866
Query: 137 aaccagaaggggaaggacaaaacaaactcacgtacctttctcttgtaacgctttctcagt 196
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 aaccagaaggggaagaacaaaacaaactcacgtacctttctcttgtaacgctttctcagt 806
Query: 197 ggcttggtggcagcaaggagagtcttctgtgtcatgatcggatgctgaagtcgaggagga 256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 ggcttggtggcagcaaggagagtcttctgtgtcatgatcggatgctgaagtcgaggagga 746
Query: 257 tgaagtgtctcccgagatagaggagaaagggtccccttctggatgctgtgatcctcctgg 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tgaagtgtctcccgagatagaggagaaagggtccccttctggatgctgtgatcctcctgg 686
Query: 317 agactcagtcgtgtggtgggatgagaaggccctagggctcgtcacgggggtgaggagtgt 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 agactcagtcgtgtggtgggatgagaaggccctagggctcgtcacgggggtgaggagtgt 626
Query: 377 gacaccacactccgattctggagaagaaactctccaagccttgggcagaagcgatttggt 436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gacaccacactccgattctggagaagaaactctccaagccttgggcagaagcgatttggt 566
Query: 437 aacatatgtgtggttatagtgtctgagggctgttggtatagaggtcatagagcagattta 496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aacatatgtgtggttatagtgtctgagggctgttggtatagaggtcatagagcagattta 506
Query: 497 tgcctgagtgtcaggactgggcagcgtttactttgaaacggcctcaccttttcctgggaa 556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgcctgagtgtcaggactgggcagcgtttactttgaaacggcctcaccttttcctgggaa 446
Query: 557 aggaatttttatttgttggcttaccgccgagaatgcacagttcataactactcaccaaat 616
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 445 aggaatttttatttgttggcttaccgccgagaatgcacagtttataactactcaccaaat 386
Query: 617 caactgtgcagctaacacaggcacctaaggcatgtagaaaccattactgagatgttcatt 676
|||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct: 385 caactgtgcagctaacacaggcacctaaggcatgtagaaatgattactgggatgttcatt 326
Query: 677 atttccactagattaaaacaacagccgaacatcaaaggcaccactatgaaatacggcaat 736
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atttccactagattaaaacaacagccgaacatcaaaggcaccactatgaaatacggcaat 266
Query: 737 gtggataatgcttttggctaccttactgaatggaggaaaggatttaaa 784
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtggataatgcttttggctaccttactgaatggaggaaaggatttaaa 218
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 784
Length of database: 1183
Length adjustment: 10
Effective length of query: 774
Effective length of database: 1173
Effective search space: 907902
Effective search space used: 907902
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no122_c18.g1 MSMg01no122_c18.g1 CHROMAT_FILE:
MSMg01no122_c18.g1 PHD_FILE: MSMg01no122_c18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:30:21 2005
(684 letters)
>mm_chr6_4931031_4932114
Length = 1084
Score = 1245 bits (644), Expect = 0.0
Identities = 674/684 (98%)
Strand = Plus / Plus
Query: 1 agagaatggattataaaagatgcactagccactttgcgtggtggattgtcgagatactga 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 201 agagaatggattataaaagatgcactagccactttgcgaggtggattgtcgagatactga 260
Query: 61 tagacccagcagaaggcagagggaaggaagggcttgttgtggatcactaattgggtagat 120
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagaagcagcagaaggcagagggaaggaagggcttgttgtggatcactaattgggtagat 320
Query: 121 ggtccatcctggggaaggagtggcagagagaggctctagctgtgacggcatgaacatgcg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggtccatcctggggaaggagtggcagagagaggctctagctgtgacggcatgaacatgcg 380
Query: 181 tctgctggttgcattttgtttggagtcaggaagcagagacagagattgatgcttagctgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctgctggttgcattttgtttggagtcaggaagcagagacagagattgatgcttagctgg 440
Query: 241 tgcctcctcttaccgtctttttataattttaacccattacctcatcctaatgggaaggta 300
|||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 441 tgcctcctcttaccatctttttataattttaacccaaaacctcatcctaatgggaaggta 500
Query: 301 ctctctccacactagaatggggctttccccgttgcttagccttctctggaaaggcttcac 360
||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||
Sbjct: 501 ctctctccacactaggatggggctttccccgttggttaaccttctctggaaaggcttcac 560
Query: 361 gaatatgctcagatgtggtttcttaggtgactctgaatccagtcatactgacagaatcca 420
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 561 gaatatgctcagatgtggtttcttaggtgactctgaatccagtcataatgacagaatcca 620
Query: 421 gttatgttgacagtagagatttagaaccagcatgcaggggacaggtatgatggtaaggat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gttatgttgacagtagagatttagaaccagcatgcaggggacaggtatgatggtaaggat 680
Query: 481 ggcttcttggctggatatgatccgaactcatttgactacttcaaattgagtcttaagaca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggcttcttggctggatatgatccgaactcatttgactacttcaaattgagtcttaagaca 740
Query: 541 tagacaaatgaaaatatttcaaatattttgttttgtttttgagaaattgtaggttcagct 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tagacaaatgaaaatatttcaaatattttgttttgtttttgagaaattgtaggttcagct 800
Query: 601 gtgtcatataaaagagtttcacttgtctttgcttcctgtgcgttttatggctttccatga 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gtgtcatataaaagagtttcacttgtctttgcttcctgtgcgttttatggctttccatga 860
Query: 661 gttctctccaccgagtgcactttt 684
||||||||||||||||||||||||
Sbjct: 861 gttctctccaccgagtgcactttt 884
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1084
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1074
Effective search space: 723876
Effective search space used: 723876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
