Query= MSMg01no122_l06.b1 MSMg01no122_l06.b1 CHROMAT_FILE:
MSMg01no122_l06.b1 PHD_FILE: MSMg01no122_l06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:31:28 2005
(726 letters)
>mm_chr6_117413910_117415036
Length = 1127
Score = 1344 bits (695), Expect = 0.0
Identities = 716/723 (99%), Gaps = 1/723 (0%)
Strand = Plus / Minus
Query: 5 gaattcttagcaagtactgatccgttacaagctggaaaaggttactttttttt-ctccag 63
|||||||||||||||||||||| | |||||||||||||||||||||||||||| ||||||
Sbjct: 927 gaattcttagcaagtactgatctggtacaagctggaaaaggttacttttttttcctccag 868
Query: 64 ttgcattatgcaaccagctttctgtagccattataagaaggccagtctaacaattatgat 123
||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 867 ttgtagaatgcaaccagctttctgtagccattataagaaggccagtctaacaattatgat 808
Query: 124 aaggatgggaacacaagactgactaagccagtgcagagctctttcctgaatgcccagaac 183
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 807 aaggatgggaacacaagactgactaagccagtgcagagctgtttcctgaatgcccagaac 748
Query: 184 agatgtgatttgtagacttaaggatctgctctcaggtgaaagaggcaggatggcctcatg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 agatgtgatttgtagacttaaggatctgctctcaggtgaaagaggcaggatggcctcatg 688
Query: 244 aaccgttttcttcagggcaccccttggaaggatcagaatggacgccaggtgctcaggaag 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 aaccgttttcttcagggcaccccttggaaggatcagaatggacgccaggtgctcaggaag 628
Query: 304 ctgagtcatgagttgcactatggctgctattagctagcagtgaatgtggcctagggttag 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 ctgagtcatgagttgcactatggctgctattagctagcagtgaatgtggcctagggttag 568
Query: 364 ctcactggggctgccagagtccacaccataaaagtatagattcttactactacaggaagg 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 ctcactggggctgccagagtccacaccataaaagtatagattcttactactacaggaagg 508
Query: 424 aaacagagtgacccactgcgataatattagccactgaataatggtgttggccatctttct 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 aaacagagtgacccactgcgataatattagccactgaataatggtgttggccatctttct 448
Query: 484 tttaaaatcatagctacacatagaataataggatgtattaaagatttatgtcaggcccca 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 tttaaaatcatagctacacatagaataataggatgtattaaagatttatgtcaggcccca 388
Query: 544 gggataagctcaccactgtctactattgctaagactgaggccaaattcataaactggact 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 gggataagctcaccactgtctactattgctaagactgaggccaaattcataaactggact 328
Query: 604 ttctgtgcgtcaaactacccttggcatgccttttatttattaactgctttatacttttat 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ttctgtgcgtcaaactacccttggcatgccttttatttattaactgctttatacttttat 268
Query: 664 ttattaaatgctcctgcatactgcctttattactgtcctctgaagtccacatgcatgttg 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 ttattaaatgctcctgcatactgcctttattactgtcctctgaagtccacatgcatgttg 208
Query: 724 cat 726
|||
Sbjct: 207 cat 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 726
Length of database: 1127
Length adjustment: 10
Effective length of query: 716
Effective length of database: 1117
Effective search space: 799772
Effective search space used: 799772
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no122_l06.g1 MSMg01no122_l06.g1 CHROMAT_FILE:
MSMg01no122_l06.g1 PHD_FILE: MSMg01no122_l06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:31:28 2005
(687 letters)
>mm_chr6_117232702_117233788
Length = 1087
Score = 1212 bits (627), Expect = 0.0
Identities = 672/687 (97%)
Strand = Plus / Plus
Query: 1 aaagcaactcatttcatatataagaactctcttctcaagacctaagcacgcactgaagac 60
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct: 201 aaagcaactcatttcatatataagaactcttttctcaagacctaagcacacactgaagac 260
Query: 61 ccatgtcttagcatgctcactggaggagataataaatccgtggggtttgatggagcacaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccatgtcttagcatgctcactggaggagataataaatccgtggggtttgatggagcacaa 320
Query: 121 actgtcagcctgttcatctgctagccaggacacagccttgctcaatgccttttgctttca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actgtcagcctgttcatctgctagccaggacacagccttgctcaatgccttttgctttca 380
Query: 181 tctgcacatacctttgaaagatacacaactatagatgttaatactggacctttatggtca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctgcacatacctttgaaagatacacaactatagatgttaatactggacctttatggtca 440
Query: 241 tgtgaaagaatgacatggagcagatttgtattggtacacttacacatgcacacataagat 300
|| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgcgaaagaatgacacggagcagatttgtattggtacacttacacatgcacacataagat 500
Query: 301 gaacatgtgcaaaattagggaagcctaaatagggctatgggtgcattgaggttgctttct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaacatgtgcaaaattagggaagcctaaatagggctatgggtgcattgaggttgctttct 560
Query: 361 ggttatgggacaagacactgttctagcacaagatattgtcactgtgggttaatggagatc 420
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 561 ggttatgggacaagacactgttctagtacaagatattgtcactgtgggttaatggagatc 620
Query: 421 tctctgtattatctcttagagctgtatgtgttcctaaaagtatcttttaaaaattgaaaa 480
|||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct: 621 tctctgtattatctcttagaactgtatgtgttcctataagtatcttttaaaaattgaaaa 680
Query: 481 atcaatctttataatctgatgtgtttaaataacaatacaaaacaggcattgaggtccaga 540
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtcaatccttataatctgatgtgtttaaataacaatacaaaacaggcattgaggtccaga 740
Query: 541 aagaccacctttctcttggcctgtctccacccttcatatctcaggattcatacccagcat 600
||||||||||||||||||||||||||||||||| ||| | |||| ||||||| |||||||
Sbjct: 741 aagaccacctttctcttggcctgtctccaccctccatgtttcagtattcataaccagcat 800
Query: 601 tttgtccatttccccagcaccctgtgctgcagagccaaggtctgcattgcctgatacctg 660
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tttgtccatttctccagcaccctgtgctgcagagccaaggtctgcattgcctgatacctg 860
Query: 661 tggagataatgcctgctgttgctacag 687
|||||||||||||||||||||||||||
Sbjct: 861 tggagataatgcctgctgttgctacag 887
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 687
Length of database: 1087
Length adjustment: 10
Effective length of query: 677
Effective length of database: 1077
Effective search space: 729129
Effective search space used: 729129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
