Query= MSMg01no122_o03.b1 MSMg01no122_o03.b1 CHROMAT_FILE:
MSMg01no122_o03.b1 PHD_FILE: MSMg01no122_o03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:31:51 2005
(671 letters)
>mm_chr6_144938362_144939434
Length = 1073
Score = 1228 bits (635), Expect = 0.0
Identities = 653/659 (99%), Gaps = 2/659 (0%)
Strand = Plus / Minus
Query: 15 gaattcctt-aactgtgtgtc-catctgataaagatacaggccatggattgagccccctt 72
||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 677 gaattccttaaactgtgtgtctaaactgataaagatacaggccatggattgagccccctt 618
Query: 73 cccaccgtgtcttaggaacccaggctgagccagtgactgatgacattgtcacctgtgctg 132
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 ccaaccgtgtcttaggaacccaggctgagccagtgactgatgacattgtcacctgtgctg 558
Query: 133 aggatttttttccctcaggaaagaacacatgtggagtagtctctcctcttggtccatgcc 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 aggatttttttccctcaggaaagaacacatgtggagtagtctctcctcttggtccatgcc 498
Query: 193 cacaagttcagaacactgctaatcagctaaggtagctcagctagcttactaatggcagac 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 cacaagttcagaacactgctaatcagctaaggtagctcagctagcttactaatggcagac 438
Query: 253 agtacctaagagaagcaggagttctaaagcccttagtattgctctgcccccctaaagagg 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 agtacctaagagaagcaggagttctaaagcccttagtattgctctgcccccctaaagagg 378
Query: 313 gacggtgctgtcatacaagaatgttcaagattctggaagggaaagggttttgagggctga 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gacggtgctgtcatacaagaatgttcaagattctggaagggaaagggttttgagggctga 318
Query: 373 gttacaaaagcctctgaaattgttagtttttctggcttgaataccacgccttaagaatgt 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 gttacaaaagcctctgaaattgttagtttttctggcttgaataccacgccttaagaatgt 258
Query: 433 atatgtatccaaaattatttaaatgttggatggaaaggttttggtgtctgtgtatgtgtc 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 atatgtatccaaaattatttaaatgttggatggaaaggttttggtgtctgtgtatgtgtc 198
Query: 493 tgtgcccatttgtgtgcctatgtgtgagtgtgatctgtgcctgtgtgtgtatgtaactgg 552
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 197 tgtgcccatttgtgtgcctatgtgtgtgtgtgatctgtgcctgtgtgtgtatgtaactgg 138
Query: 553 ggggtggggaggtaggaggacattatcaagtaagcagccaccttcatgataaaagctcat 612
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 ggggtggggaggtaggaggacattatcaagtaagcagccaccttcatgataaaagctcat 78
Query: 613 ctcatgactcaactgaattcatgaacacaggaccgttgtggttcctctggaacctgctg 671
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77 ctcatgactcaactgaattcatgaacacaggaccgttgtggttcctctggaacctgctg 19
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1073
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1063
Effective search space: 702643
Effective search space used: 702643
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no122_o03.g1 MSMg01no122_o03.g1 CHROMAT_FILE:
MSMg01no122_o03.g1 PHD_FILE: MSMg01no122_o03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:31:51 2005
(783 letters)
>mm_chr6_144851595_144852776
Length = 1182
Score = 1444 bits (747), Expect = 0.0
Identities = 774/783 (98%), Gaps = 2/783 (0%)
Strand = Plus / Plus
Query: 1 tgggggagcagagggtacggctgagagtcttcacctctccacacaccagcaggcaggaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 tgggggagcagagggtacggctgagagtcttcacctctccacacaccagcaggcaggaag 261
Query: 61 tggggtcaggtcacaaacctccaggtccgccccaacagcaacccacttcctccagagaag 120
||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct: 262 tggggtcaggtcacaaacctcgaggtccgccccaaaagcaacccacttcctccagagaag 321
Query: 121 cttcgtctcctgaaggctccgtaatctccccccacaggaccaccagctgggaacgggtgt 180
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 322 cttcgtctcctgaaggctccgta-tctccccccacaggaccaccagctgggaacgggtgt 380
Query: 181 tcagatgcccgggcctgggggcacagtcacatccaaagcatacataacgcactccttaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcagatgcccgggcctgggggcacagtcacatccaaagcatacataacgcactccttaat 440
Query: 241 caagtcattgtctgcactctgagaagcactgtcgagcaaatgtcttgtcacttaatcttg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caagtcattgtctgcactctgagaagcactgtcgagcaaatgtcttgtcacttaatcttg 500
Query: 301 tcacttggacagagtggttgcagcataaattcatatggagaagacatctgatagagttta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcacttggacagagtggttgcagcataaattcatatggagaagacatctgatagagttta 560
Query: 361 agtcctgcacaaagcaaattaaggatttctgggaactgagtaggcaataaggtagaaggg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agtcctgcacaaagcaaattaaggatttctgggaactgagtaggcaataaggtagaaggg 620
Query: 421 aacagggggagggggtggaaatgaacatccgtgctctacccatgcatccaaagagacatt 480
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 621 aacagggggagggggtggaaatgaacatccgtgctctacccatgcatccaaacagacatt 680
Query: 481 gctttaaaaaaacaaaaagtcaatttccatgtatccgtgccctttataaccttcctaggg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gctttaaaaaaacaaaaagtcaatttccatgtatccgtgccctttataaccttcctaggg 740
Query: 541 aaggttgtaggactttctgtggtctttctatactgtaaatatgagcgtgataatgctttt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aaggttgtaggactttctgtggtctttctatactgtaaatatgagcgtgataatgctttt 800
Query: 601 caaacatttctacttcagaaaaaaaaaagtcttttaatgaaaaactacagcccagaagtc 660
|||||||||||||| || |||||||||| |||||||||||||| ||||||||||||||||
Sbjct: 801 caaacatttctactcca-aaaaaaaaaattcttttaatgaaaagctacagcccagaagtc 859
Query: 661 aaagggtccacacccaccctcccatgctgttcatgtctgtgggttccagtaattatcctt 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 860 aaagggtccacacccaccctcccatgctgttcatgtctgtgggttccagtaattatcctt 919
Query: 721 aaaagttccctgagagcaatttcttagattaatgaccttcagggaggctgacaccttcag 780
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 920 aaaaattccctgagagcaatttcttagattaatgaccttcagggaggctgacaccttcag 979
Query: 781 aag 783
|||
Sbjct: 980 aag 982
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 783
Length of database: 1182
Length adjustment: 10
Effective length of query: 773
Effective length of database: 1172
Effective search space: 905956
Effective search space used: 905956
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
