Query= MSMg01no123_b13.b1 MSMg01no123_b13.b1 CHROMAT_FILE:
MSMg01no123_b13.b1 PHD_FILE: MSMg01no123_b13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:32:20 2005
(332 letters)
>mm_chr6_48475370_48476101
Length = 732
Score = 611 bits (316), Expect = e-179
Identities = 328/332 (98%)
Strand = Plus / Minus
Query: 1 accacatccaacaaggttttatttttatatagaaatgaactttaaaaataatagcttaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 accacatccaacaaggttttatttttatatagaaatgaactttaaaaataatagcttaag 303
Query: 61 aaaaccctcctatatgaaaacaagcaggggaaagtactggaaggtctagagatactacag 120
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 aaaaccctcctctatgaaaacaagcaggggaaagtactggaaggtctagagatactacag 243
Query: 121 ggaacatggaaccttaaaacaggagctaagaatttatcctgagggttggagtagggctca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 ggaacatggaaccttaaaacaggagctaagaatttatcctgagggttggagtagggctca 183
Query: 181 gcagttaagatcacttcctgctcttcgagaggaccaagttcagtttccagcacccacact 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 gcagttaagatcacttcctgctcttcgagaggaccaagttcagtttccagcacccacact 123
Query: 241 ggtgtttcacaactgctccaaagtccagctccaggagatatgattatcttttaatatcta 300
||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct: 122 ggtgtttcacaactgctccaaagtccagctccaggagatatgaccatcttttaatctcta 63
Query: 301 tgggcaccacacacacatggcagacatgcaca 332
||||||||||||||||||||||||||||||||
Sbjct: 62 tgggcaccacacacacatggcagacatgcaca 31
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 332
Length of database: 732
Length adjustment: 9
Effective length of query: 323
Effective length of database: 723
Effective search space: 233529
Effective search space used: 233529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no123_b13.g1 MSMg01no123_b13.g1 CHROMAT_FILE:
MSMg01no123_b13.g1 PHD_FILE: MSMg01no123_b13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:32:20 2005
(414 letters)
>mm_chr6_48350572_48351385
Length = 814
Score = 717 bits (371), Expect = 0.0
Identities = 404/415 (97%), Gaps = 2/415 (0%)
Strand = Plus / Plus
Query: 1 agatgcacatttccaggtgactgcctggggccacctggtgctagatattttgaagggcag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agatgcacatttccaggtgactgcctggggccacctggtgctagatattttgaagggcag 260
Query: 61 tagtgccattgcctaccctgttggctctttattacagaacctaagattgtccacattttg 120
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagtgccgttgcctaccctgttggctctttattacagaacctaagattgtccacattttg 320
Query: 121 tgtgctaggaggccaacaagaaatgcaaaatggctccctgctagaggtttgtggaatacc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtgctaggaggccaacaagaaatgcaaaatggctccctgctagaggtttgtggaatacc 380
Query: 181 tgatatgttcctgagggatagtggccacagtgggccagagccacaagttaagcctgggga 240
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct: 381 tgatatgttcctgagggatagtggccatagtgggccagagccacaagttaagcctgggta 440
Query: 241 gagagtctgctgggctgcccagcaggccatagagatggttggtaatgcacagtgagccaa 300
|||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 441 gagagtctgctgggttgcccagcaggccatagagatggttgggaatgcacagtgagccaa 500
Query: 301 gaggcaaaggacactgcctctcatcccttctggtcttcc-gcatgtcagcagtcagtgga 359
||||||||| ||||||||||| ||||||||||| ||||| | ||||| ||||||||||||
Sbjct: 501 gaggcaaagtacactgcctctgatcccttctgggcttccag-atgtcggcagtcagtgga 559
Query: 360 gatgctgtccctggccagatgtgtgactggagcctaactacttcaaaacgtcagg 414
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gatgctgtccctggccagatgtgtgactggagcctaactacttcaaaacgtcagg 614
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 414
Length of database: 814
Length adjustment: 9
Effective length of query: 405
Effective length of database: 805
Effective search space: 326025
Effective search space used: 326025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
