Query= MSMg01no123_b15.b1 MSMg01no123_b15.b1 CHROMAT_FILE:
MSMg01no123_b15.b1 PHD_FILE: MSMg01no123_b15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:32:21 2005
(602 letters)
>mm_chr6_110029185_110030186
Length = 1002
Score = 932 bits (482), Expect = 0.0
Identities = 520/534 (97%), Gaps = 5/534 (0%)
Strand = Plus / Minus
Query: 1 catgaaagcctcagcagcaatcagatgttataatacaggaagtcatccacattaattccc 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 529 catgaaagcctcagcagcaatcagatgttaaaatacaggaagtcatccacattaattccc 470
Query: 61 cttgaaagagcttcgggaaaacatcaaagacgcctgtgaagacgtctttgtgctcagttt 120
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 469 cttgaaagagcttcgggaaaacatcaaagacgcctgtgaagacatctttgtgctcagttt 410
Query: 121 aagaaaatgttatttctcacagacagtaattttgtacaatttcattatataagaaacggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 aagaaaatgttatttctcacagacagtaattttgtacaatttcattatataagaaacggg 350
Query: 181 ctttaaagacagaatttcttgaacaagtcatcccacctcaaataaaggagaaggaggcct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 ctttaaagacagaatttcttgaacaagtcatcccacctcaaataaaggagaaggaggcct 290
Query: 241 aggctgacaaggcatccctcatatgatggtcaccattgccaaaggaggataccacaggga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 aggctgacaaggcatccctcatatgatggtcaccattgccaaaggaggataccacaggga 230
Query: 301 acatatcttgagaacacaccttgaaactgaaaaaaacaaaaaacaaaaaaacaaacaaac 360
| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 229 atatatcttgagaacacaccttgaaactgaaaaaaacaaaaaac-aaaaaacaaacaaac 171
Query: 361 aaaaaaaaactagatttctcattactggaatgcgttggagggaaaagaaagatagaaaga 420
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 170 --aaaaaaactagatttctcattactggaatgcgttggagggaaaagaaagagagaaaga 113
Query: 421 aacgtttcctaatattctgcttctgagggggaaaaagactttaatggcaaaaaaaaagaa 480
|| ||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||
Sbjct: 112 aaagtttcctaatagtctgcttctgagggggaaaaatactttaatgg--gaaaaaaagaa 55
Query: 481 tcattttaacctgacaatctctttcttgtctaatgttatcaagtgtgataaatt 534
||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54 tcattataacctgacaatctctttcttgtctaatgttatcaagtgtgataaatt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1002
Length adjustment: 10
Effective length of query: 592
Effective length of database: 992
Effective search space: 587264
Effective search space used: 587264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no123_b15.g1 MSMg01no123_b15.g1 CHROMAT_FILE:
MSMg01no123_b15.g1 PHD_FILE: MSMg01no123_b15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:32:21 2005
(477 letters)
>mm_chr6_109863647_109864523
Length = 877
Score = 899 bits (465), Expect = 0.0
Identities = 474/477 (99%)
Strand = Plus / Plus
Query: 1 gcactgtggaaattaccaagctttattagactggcatctgttttatctcatgtttataaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcactgtggaaattaccaagctttattagactggcatctgttttatctcatgtttataaa 260
Query: 61 tatcactaaaatagtctttgaactgaagtctacagttgctttactgtagctctagtgaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatcactaaaatagtctttgaactgaagtctacagttgctttactgtagctctagtgaca 320
Query: 121 ggtattctgagcaatcatcccctgctacttatatacattgcgcttgcatcagaggtagct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggtattctgagcaatcatcccctgctacttatatacattgcgcttgcatcagaggtagct 380
Query: 181 ctgggattcatgctttcttgaatcctgcggtctctattatcctttctagcatttcctcat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgggattcatgctttcttgaatcctgcggtctctattatcctttctagcatttcctcat 440
Query: 241 tccttagttggagtgcaactctcatgttgagtttggccttttgattttctagtgacagga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tccttagttggagtgcaactctcatgttgagtttggccttttgattttctagtgacagga 500
Query: 301 gatgcagaaacgatgtgcatagtgtcttttactgtgactctttctaggaatgcattcttt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gatgcagaaacgatgtgcatagtgtcttttactgtgactctttctaggaatgcattcttt 560
Query: 361 attctctctctacttctgcattttccaaagaacgagcagaggatagaaaaccagtaacta 420
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct: 561 attctctctctacttctgcattttccaaagaaggagcagaggatagaaaaccagtaaata 620
Query: 421 gccacatgacctgccatacccagcactaaccttttatagtatcaaatagatgaaccc 477
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 621 gccacatgacctgccatacccagcactaacattttatagtatcaaatagatgaaccc 677
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 877
Length adjustment: 10
Effective length of query: 467
Effective length of database: 867
Effective search space: 404889
Effective search space used: 404889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
