BAC Information

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BAC

Clone NameMSMg01-123M14
Chromosome6 (Build37)
Map Location 113,715,794 - 113,716,324
singlet/doubletsinglet
Overlap geneAtp2b2
Upstream geneSrgap3, EG666387, EG620161, LOC666397, Thumpd3, EG434078, Setd5, Lhfpl4, Mtmr14, Cpne9, Brpf1, Ogg1, Camk1, Tada3l, Arpc4, Ttll3, Rpusd3, Cidec, Jagn1, Il17re, Il17rc, Creld1, Prrt3, Tmem111, Fancd2, 4931417G12Rik, 6720456B07Rik, Vhlh, Irak2, Tatdn2, Ghrl, Sec13
Downstream geneSlc6a11, LOC666491, Slc6a1, Hrh1, Atg7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-123M14.T7 (MSMg01no123_m14.b1)MSMg01-123M14.TJ (MSMg01no123_m14.g1)
ACCAG333304AG333305
length1,2841,190
length of high quality
(start - end)
659 (89 - 747)530 (126 - 655)
definitionCHROMAT_FILE: MSMg01no123_m14.b1 PHD_FILE: MSMg01no123_m14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:33:59 2005CHROMAT_FILE: MSMg01no123_m14.g1 PHD_FILE: MSMg01no123_m14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:33:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GAATTCTTNNNNNTCCATTGGGCGCTATAGACTACTATAGGGAGAGGATC
CGCGGAATTCCAGGACAGCCATGCCTACCTATATAGACTCTTGTCTCCAA
AAGGAAGAAGAAAGAAAAACCGTCTCCATGGTCTCAATATAATTTAAAAG
TCCAATCTCTTAATTGTAACCCCCATAAAAAGCAAATTATGATCTTTGAG
CACACAGGCACAGAGTGTGCATTGCCGTTCCAACAGGGAGGAATAGTGGC
ATAGGAAGGAAACGCTGGACCAAGCAAGATGGAAACCCAGTAGGGCAAAC
TCCGAATCCTATCTCTGTCTGATATCCAAAGGTCTTACGTGGCTCTTCCT
CACAGCTCGGTAACTGCAGCCTACGCCTCTCTTGGGTTATTTCTGCTCCC
TGTCTGCAGCTCTCCCTAGCAGATATCCCACAGCTCTGGCACAGTGGGAT
CGCCAGTGTGATCCAGGCTCCACTTTCACTGTTCACACAGTGGCAGCTCT
GGGCTACGCAGACTCCCTACCACACACCTGACCTCAGCAGCTCTCAATCC
CGGAGGAAGATTCTACAACCCATTTTCTTATATATCCCTCATGATCCTAT
AGCCAGAACCACAAGACCAATGCTGCCAAGTTATGCTGCCTGTTGGGGAC
GGAGCCTGGTCCCTACATTTTTATAAATTTTGTTCTGTTACTGCCTTTTG
GGAACAGAAAATTTCTTATGCCTTTTTCTTCCATAAATTGCAGGATTAGC
TCAGGTGGTGTCTTGCCCTGAGGGTACTCAACCCCTTATTCCATTTCTCA
TCAGTCTTCTTATTTCTTTCAGCCCAAGCCTTGGCTCCAATGTTGAATTT
CCCAGCGATCTTTTTCTCCTCCAAATTGTGTATTATTCATCCAACCTCAG
AATTGCTGTCTTGAAATTTCCCTCTGCCCAAGAATACAGCTGAAAGGTTA
CCACTTGATTCTATGCGCATGTGCTCTAATTACTGTTTTAACTACCGACC
GACTTTTTCATCCTATATTTTTGTTGGTTTTTTGTACCCCCTCTCCTTTG
GAGATCTCCCTTTCTCCCTTTCCCTTGTCTTAAATTTCCTCTGTTATTGC
TCATGGATTCCCCTTCTTTGGTGTTAATGTTTGCTAATTTTATTTTTGTG
ATCCTTCCTGATTATAATTCCTCTCCCGCGCACAATTATTACCCTGTCTC
TAAATACATTAATCTTATCTTCTTCTATTCGCTTTCCCTTTCTCAACTTT
CTCTTATCTGTTCTTCTTCTCTCTATTTGCTATC
GTATTTTTTNNNNCAGCATGGATGCTGGGGCGCCXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTTTTGAGACCCTATCAGGTTTAAT
CAGAGGATGTTGTGATCCTTTGGAAATGCCTGTCGAAAGCATAAAAGGAA
AGCCACAGGCACCATCAGCCTCTCCTGGTTAGTTACCTAGGGAGGTTTCT
GGGAGAAGAGTCAGCCCTGGGTTTTTTTAAGACAAGGAAGACCTACCTAA
GTGATGCCCTCCCTCATGGCTTTTACCTTCTCTTACAGGTCCCAGAAGCC
ATCCGCAAGTGCCAGCGGGCAGGTATCACAGTCCGCATGGTCACCGGTGA
CAATATCAACACAGCCCGGGCCATCGCCATCAAGTGTGGCATTATCCACC
CTGGAGAGTACTTCCTGTGCCTGGAAGGCAAAGAATTCAATCGGAGGATT
CGCAACGAGAAGGTGGAGGTACGCATGCGCATGTGCCCTCCGCAAAGGCT
CTGAAGTGGGCCAAGCTCCAGAGGGGGCCGGGAGGCATGGGCCCTGCATG
CTTGAACAGAAGCCAGCTGAAGAGCCCAGCGACTCTGCATGGGGCTCGAT
TTCTCTCTGTGACCCCCCCCCACCGACATACCACACCCCTCTCCAGATTG
AGCAGGAGCGGATTGACAAGATCTGGCCAAAGTTGAGGGTGCTGGCTCGC
TCCTCGCCCACGGATAAGCACACGCTTGGTCAAGGTAAGCCTGGAGTAAC
TATGGTGATTGTGAGCCCCAGAACTAACCCAGCCTAAACCAAGCCCGATT
TGCATGGCCTTCGCAGTTTCCCCCCATGGGTGCTCTAGCTGGTTCCTTGG
CTATGGGTTGACACAGGTTTCCCCATTGTAAAAGGGCAAAAAGGGCCACC
TAGAACTCTTCTTTTTCCCTGGGGGGCCTTTCCGGCCTTGGTTCACTTTT
CTACCCCTTGAATAAGACATTGCCCAAGGCCTTTTTATTCTTGATCCATC
TTTCTCTCCCTTTTTTCTTTCTATCCTCTTTTTACTTCTCTCTCCTTTTA
TTCTCTTATTTTCTCTTTCTCTTCCTTATTTTATCTCTATCTCTCATCTC
TTATCTTATCCTTTTTCTCCCTTTATCTATCCTTTTTCCCTCTCACTTTC
TCACCTCTCTCCTCCTCCATACGTCCTCTTCTTTCTTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no123_m14.g1 MSMg01no123_m14.g1 CHROMAT_FILE:
MSMg01no123_m14.g1 PHD_FILE: MSMg01no123_m14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:33:59 2005
         (530 letters)



>mm_chr6_113715594_113716524
          Length = 931

 Score = 1004 bits (519), Expect = 0.0
 Identities = 528/531 (99%), Gaps = 1/531 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgcctgtcgaaagcataaaaggaaagccacaggcaccatcagcctctcctggttagtta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 atgcctgtcgaaagcataaaaggaaagccacaggcaccatcagcctctcctggttagtta 672

                                                                       
Query: 61  cctagggaggtttctgggagaagagtcagccctgggtttttttaagacaaggaagaccta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 cctagggaggtttctgggagaagagtcagccctgggtttttttaagacaaggaagaccta 612

                                                                       
Query: 121 cctaagtgatgccctccctcatggcttttaccttctcttacaggtcccagaagccatccg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 cctaagtgatgccctccctcatggcttttaccttctcttacaggtcccagaagccatccg 552

                                                                       
Query: 181 caagtgccagcgggcaggtatcacagtccgcatggtcaccggtgacaatatcaacacagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 caagtgccagcgggcaggtatcacagtccgcatggtcaccggtgacaatatcaacacagc 492

                                                                       
Query: 241 ccgggccatcgccatcaagtgtggcattatccaccctggagagtacttcctgtgcctgga 300
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 491 ccgggccatcgccatcaagtgtggcattatccaccctggagaggacttcctgtgcctgga 432

                                                                       
Query: 301 aggcaaagaattcaatcggaggattcgcaacgagaaggtggaggtacgcatgcgcatgtg 360
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 431 aggcaaagaattcaatcggaggattcgcaacgagaagggggaggtacgcatgcgcatgtg 372

                                                                       
Query: 361 ccctccgcaaaggctctgaagtgggccaagctccagagggggccgggaggcatgggccct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 ccctccgcaaaggctctgaagtgggccaagctccagagggggccgggaggcatgggccct 312

                                                                       
Query: 421 gcatgcttgaacagaagccagctgaagagcccagcgactctgcatggggctcgatttctc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 gcatgcttgaacagaagccagctgaagagcccagcgactctgcatggggctcgatttctc 252

                                                              
Query: 481 tctgtga-cccccccccaccgacataccacacccctctccagattgagcag 530
           ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 tctgtgaccccccccccaccgacataccacacccctctccagattgagcag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 931
Length adjustment: 10
Effective length of query: 520
Effective length of database: 921
Effective search space:   478920
Effective search space used:   478920
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)