Query= MSMg01no124_a19.b1 MSMg01no124_a19.b1 CHROMAT_FILE:
MSMg01no124_a19.b1 PHD_FILE: MSMg01no124_a19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:34:36 2005
(832 letters)
>mm_chr6_12850906_12852134
Length = 1229
Score = 1502 bits (777), Expect = 0.0
Identities = 808/819 (98%), Gaps = 3/819 (0%)
Strand = Plus / Minus
Query: 14 ggaattcccctctattcttaatgcccatcattgaaaagtattcataaagtttattttata 73
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 895 ggaattcccctctattcttaatgtccatcattgaaaagtattcataaagtttattttata 836
Query: 74 aggaatcttcctttccattcactattaaagataatgtgcattgttttaattatagtgaag 133
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 835 aggaat-ttcctttccattcactattaaagataatgtgcattgttttaattatagtgaag 777
Query: 134 gaaaaaaaaaaacagaaaaatcatgttaactttttgagagttcttcccttctaataaagg 193
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 g--aaaaaaaaacagaaaaatcatgttaactttttgagagttcttcccttctaataaagg 719
Query: 194 tgtagttaacctaaatccctttcctgttacagttggtgaaagttcaaagttcagcttggg 253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 tgtagttaacctaaatccctttcctgttacagttggtgaaagttcaaagttcagcttggg 659
Query: 254 atgtgaaagggaagcccaagatgtgatcctgcctctcatctgggccaagcttaagccctt 313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 atgtgaaagggaagcccaagatgtgatcctgcctctcatctgggccaagcttaagccctt 599
Query: 314 gtacatctgacagccttaaactgaccagacttactcagcaattcaacttagaaacagttg 373
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 598 gtacatctgacagccttaaactgaccagacttactcagcaattcaacttggaaacagttg 539
Query: 374 ttcatcgttgggtccaagatgatgtgtttttacagtaggaatgattagaattttcactaa 433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 ttcatcgttgggtccaagatgatgtgtttttacagtaggaatgattagaattttcactaa 479
Query: 434 atgaggattatagtatacctagtaaggctcaaatgtttggtatgttagtaggtagtacta 493
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 478 atgaggattatagtatacctagtaaggctcaaatgtttggtatgttagtaggtaggacta 419
Query: 494 atctttaaatactacctcaaaccacagaatgcatgtagagtaataaaggcaactgaagag 553
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 atctttaaatactacctcaaaccacagaatgcatgtagagtaataaaggcaactgaagag 359
Query: 554 ttagcttttgactcaatttacaagcatcatttaaaaaatccattatgacttttccatgta 613
||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||||
Sbjct: 358 ttagcttttgactcaatttacaagcatcactaaaaaaatccagtatgacttttccatgta 299
Query: 614 ttttctcagacagataacaggagtgtgttacactttctcctgatggatattttgtgatgc 673
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 298 ttttctcagacagataacaggagtgtgttacactttttcctgatggatattttgtgatgc 239
Query: 674 ctcatccctcctaccttgtaaacacctctctctctctctctttctctctctccgtccctc 733
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 ctcatccctcctaccttgtaaacacctctctctctctctctttctctctctccgtccctc 179
Query: 734 cctccctccctttctccctctgtctctccctcctcctactcctccctttcccctcccctc 793
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 cctccctccctttctccctctgtctctccctcctcctactcctccctttcccctcccctc 119
Query: 794 cctctcctcctctcttcccctctttccctcttgctctct 832
||||||||| |||||||||||||||||||||||||||||
Sbjct: 118 cctctcctcttctcttcccctctttccctcttgctctct 80
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 832
Length of database: 1229
Length adjustment: 10
Effective length of query: 822
Effective length of database: 1219
Effective search space: 1002018
Effective search space used: 1002018
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no124_a19.g1 MSMg01no124_a19.g1 CHROMAT_FILE:
MSMg01no124_a19.g1 PHD_FILE: MSMg01no124_a19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:34:36 2005
(728 letters)
>mm_chr6_12818213_12819340
Length = 1128
Score = 1027 bits (531), Expect = 0.0
Identities = 561/575 (97%), Gaps = 7/575 (1%)
Strand = Plus / Plus
Query: 1 gaacattaagtgctctgaacactgaggcatcctgccaagccctagtttaatgtttaaaac 60
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 201 gaacattaagtgctctgaacactgaggcatcttgccaagccctagtttaatgtttaaaac 260
Query: 61 agtgaattctgatgttcatcatttcacaatctatttacccaacttcaagcctctctacaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtgaattctgatgttcatcatttcacaatctatttacccaacttcaagcctctctacaa 320
Query: 121 tacgaacggtcatttgtttctgacaactgctttattactggatgatatatcctattagag 180
|||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 321 gacgaacggtcatttgtttctgacaactgctttattattggat-------cctattagag 373
Query: 181 tctaaaacgtctctttgaaaaactcaccatgtcatattatttagccattgtttaggaggc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 tctaaaacgtctctttgaaaaactcaccatgtcatattatttagccattgtttaggaggc 433
Query: 241 agagatgatttagctttagcagaggtatgtactatgctatagacacttctcacctctagc 300
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 434 agagatgatttagctttagcataggtatgtactatgctatagacacttctcacctctagc 493
Query: 301 taaaagtaactaagatgaatatagatgcagttgtacaatatattggaggaagtttgacct 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 494 taaaagtaactaagatgaatatagatgcagttgtacaatatattggaggaagtttgtcct 553
Query: 361 gagtttcaatactaggtctttctctttttgccagtgtgtctgggttgattccctactact 420
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 554 gagtttcaatactaggtctttctctttttgccagtgtgtctgggttgattccttactact 613
Query: 421 cacaaaggcagtttttttcccacatgcagaatggaagggaaagagttttttcttagtgta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 cacaaaggcagtttttttcccacatgcagaatggaagggaaagagttttttcttagtgta 673
Query: 481 ggttggcagcatttgtgatgaagtaaaataaatcaatgttggtaattcttcaaaaacaac 540
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 ggttgacagcatttgtgatgaagtaaaataaatcaatgttggtaattcttcaaaaacaac 733
Query: 541 caaccaaatcttccacaaaggaatcagatggatgg 575
|||||||||||||||||||||||||||||||||||
Sbjct: 734 caaccaaatcttccacaaaggaatcagatggatgg 768
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 728
Length of database: 1128
Length adjustment: 10
Effective length of query: 718
Effective length of database: 1118
Effective search space: 802724
Effective search space used: 802724
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
