BAC Information

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BAC

Clone NameMSMg01-124K14
Chromosome6 (Build37)
Map Location 26,053,325 - 26,053,655
singlet/doubletsinglet
Overlap geneLOC100041210
Upstream geneGpr37, Pot1a, EG626912
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-124K14.T7 (MSMg01no124_k14.b1)MSMg01-124K14.TJ (MSMg01no124_k14.g1)
ACCAG333958AG333959
length1,2351,293
length of high quality
(start - end)
333 (119 - 451)563 (120 - 682)
definitionCHROMAT_FILE: MSMg01no124_k14.b1 PHD_FILE: MSMg01no124_k14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:36:03 2005CHROMAT_FILE: MSMg01no124_k14.g1 PHD_FILE: MSMg01no124_k14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:36:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCATCATTGGGCCTATAGACTCCATAGGGAGAGGATCCGCGGAATTCT
AAACTTGCTGACCTCTTTTATGTTGGTTGGTTTTGTTTGGTTTTGTTTTC
CTTTGCTTTAGGCCGCATGGGAGTAAGAAGACTTTTCAATGTGGAGGTTC
ACATCTTTAATCAACTCTCCATTTTTTCAGTCATTATTTCAACGTATATG
ACTCAGTAACATTACTTGTCTACCCTCCTGTGGGAACTTCCATTAATGTA
TGTAGCAAAGTACACTATGCATGTAATCCATAACCAAGACCTTTATTCTT
GTATACTTTAATTGGAAGCCCACAAGTCCAAAATACTTACTTGTATACCT
CTTCTGAAGTTAGTACCTGCCAAGTGACAGCTTTAGACATAAACCGCTTA
TCCCATTTCAGATACCCATGACTGATTCGAGTTGTAGCATTGGTCCTGTT
TTATACAACAGCCAATTTCACAACAATACTTCAGCTATGAGATGCTTATA
TATTTTTCCCATTCCCTGTTCCACTATGTTTCTAAAGCCTTAATAGAGAT
GGTGAAATGTTCTATTTAAGGCTGAAAAGTCCAGCATCCTTTAGTCTTAG
CACATTGAACAGCTATGGGTATCTTCACTCATAGTCATTCATTGAAGGGA
GAAGCTTCTTGATCAAAACTGTGAATAGCATTTGTCTGTAAATATAAACA
TAGGCAGATATAGAGTAGCTTGGCACCATCACAATTTATCTAACCAACAT
ACAAAACTACTTCTGTCTTCACTTAATCAAGAATAAAAGAGAAGCTTTCT
ATCAAATGATGAACTATTGGCTCTATTCAGATAGAGAAATTGAAGAATAT
CCACGTCTAGATTTATTGTTAAGTAGAAATGCAGCCTGAATAGACCCCGA
GAAAAGATACGGAGTCCATATTTATACAAGGTAAAGACCAACTAAAAAAA
AGGTTTATAGTTTATTCTAAGCCCACAATAATAACCTAATTCCTGAGCTT
TTAGCCTGGGAAACAAACAATGGATGTAGCTAAAACTCTTGGTAAATACC
TCAAAAAAGGGGAAAATTAAGAGGTATAAAATGTTGACAAATTGGCATGT
TTTGTCTTTGTGAAGGAAAATCCCTTTTAATCTAGGGCCTTTTGAACACA
AATTTTTCTCAAAGGTTATATATAAAAAGCTCCCCACATATGGAACCATC
TTTTAAATATGGGCCTTTTCCAACAAAATTTATAA
TTCCTACCCACGGTAGCCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCCCCCTTTAATTCACAAGAAATCCCCATTGAACAT
CATGCCTTACCTTTCTGTGTGATCCAGAGCTTAGTTAATTGCATGATGAT
GAGTGGGAGGTTATTCACTGGAGTATAAACAATGGCTGCACCACTGTAGA
AAGAGAGACTCCTTCCCCCAGATAACCCTAACTCTCAGAAGTCCCTCAGG
GAAAGATGGGGCCTCATAAGCCTCACCCTTTCCCATGCATGTTGAAATAA
GTGTTGTTAATAACTTTTATAAGCCAGATGTAATTGTCACCTCGGAATTT
TACTGCTGAGTAAGCTCACTCTTACTAGGGTTTGTTTGTTAGTTTGTTTG
TTTGTTTGTTTTTTCTCTTTTAACTTCAGTTAACTCAGCTCTTCTGGCTT
AAAACTCTTCTCCAAGCTGACTGATTCAGTTGAGCTTCTGTCTGCTTATC
ACTGAATTGCTCAGGTTAGCCTCAAATTAACTCTAGCAATTTGTTTTAAT
CTTATGGTTCCTTCTCATTTCCTGGCTTGTTCTTTCTGCAACCTTTCCTG
TGAGGTTCTCATAACAGCTCTATCATTCTGTCTCTTACTCATTGGCTCAT
CTCTTTCTCAAATATGGCACTTTGTGAATTCGATCTCACTTTTGAGCATG
GCTGCTTCCTTCTACAAACTAACTTTACTTTAACTGCTTGGGATTAAAGA
TGTGTGGTAAGTGAATGTCAGTATTCCCGCCAGTGGAAACAAAGGTGTGT
GGAGCGTCCTCATTACTGCTGGATCACATAGACCTGTAAATTGTGGATCC
CTTTCCTTACCATATCATCCATGTGGCTTGGATTGTAAATTTTTCTACAA
AATGCTTCCAGGGTTCAAACTTTTTTCAGGGTATCACCGTTTGCTGTCGA
TAAAATTATGGCAAGTCACTGTGGCCTTGTTCCCTAAAAACCCAGTTTTT
CTTTCCGATCTTTCTTTCACCCCCATTCTAAACCAATATTTCCTTGGGGT
TCTTACCCAAACGCCTTATATTTCCCAGTTTAATTACAAATACCCCCCTC
CTCTCTTTTTTCCCTGTATTTCCCTTGGACCCACCTCTTGACAAAGTGGG
TCTAACTCCTAAATATATACTTCTGGCCCGAACCCCCCCCAGTAATATTT
CTCCACCTTCTCTTTCATATGCCGTTGTGAACTTCTCTGTGGTGTAATAT
CCTCTCCTCTCTATCTAAAAGCTCATTTGTTCTTGTATATAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no124_k14.b1 MSMg01no124_k14.b1 CHROMAT_FILE:
MSMg01no124_k14.b1 PHD_FILE: MSMg01no124_k14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:36:03 2005
         (333 letters)



>mm_chr6_26053125_26053858
          Length = 734

 Score =  563 bits (291), Expect = e-165
 Identities = 321/331 (96%), Gaps = 1/331 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gggagtaagaagacttttcaatgtggaggttcacatctttaatcaactctcca-tttttt 59
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 201 gggagtaagaagatttttcaatgtggaggttcacatctttaatcaactctccattttttt 260

                                                                       
Query: 60  cagtcattatttcaacgtatatgactcagtaacattacttgtctaccctcctgtgggaac 119
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagtcattatttcaacatatatgactcagtaacattacttgtctaccctcctgtgggaac 320

                                                                       
Query: 120 ttccattaatgtatgtagcaaagtacactatgcatgtaatccataaccaagacctttatt 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttccattaatgtatgtagcaaagtacactatgcatgtaatccataaccaagacctttatt 380

                                                                       
Query: 180 cttgtatactttaattggaagcccacaagtccaaaatacttacttgtatacctcttctga 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttgtatactttaattggaagcccacaagtccaaaatacttacttgtatacctcttctga 440

                                                                       
Query: 240 agttagtacctgccaagtgacagctttagacataaaccgcttatcccatttcagataccc 299
           |||||||||||||||| |||||||||||||||||||| ||  | ||||||||||||||||
Sbjct: 441 agttagtacctgccaaatgacagctttagacataaactgcaaagcccatttcagataccc 500

                                          
Query: 300 atgactgattcgagttgtagcattggtcctg 330
           ||||||||||| |||||||||||||| ||||
Sbjct: 501 atgactgattcaagttgtagcattggccctg 531


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 734
Length adjustment: 9
Effective length of query: 324
Effective length of database: 725
Effective search space:   234900
Effective search space used:   234900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)