BAC Information

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BAC

Clone NameMSMg01-124M04
Chromosome6 (Build37)
Map Location 104,526,454 - 104,526,807
singlet/doubletsinglet
Overlap geneCntn6
Upstream geneChl1, LOC100043345
Downstream geneLOC384470, LOC100043716, LOC100043350
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-124M04.T7 (MSMg01no124_m04.b1)MSMg01-124M04.TJ (MSMg01no124_m04.g1)
ACCAG334030AG334031
length1,2661,216
length of high quality
(start - end)
365 (33 - 397)339 (123 - 461)
definitionCHROMAT_FILE: MSMg01no124_m04.b1 PHD_FILE: MSMg01no124_m04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:36:17 2005CHROMAT_FILE: MSMg01no124_m04.g1 PHD_FILE: MSMg01no124_m04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:36:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACTGCCAGACATTGCGCGCTAAGACTCACTAAGGGAGAGGATCCGCGGAA
TTCAATGAAAAGCAATTTCTTCTAACAGATACTGGAACTCCTGCATTTGA
GCCAGTGCTTCTTGTGTCTGAAGCCCTGCCTGCCTCTCGATATTCTCTTT
AATTCCCACACATCAGAGTGGGCCCCCTCAAAGTTCTCAAGACTGTTTCT
CCTCCAGTATTGTTCTCCTGTAGATCCATCTCTTCTTATTGACTTAAAAT
CTAACCATTCGCAGTCAAAGTCAAATGTACGTTCACTCTGAAAAAAATCT
TCTGAGAGATCCAGGGTTCTGCTTGCTCCCTAATCTCTGATCCCAAAATG
ATGAACTGTGTCATTTAAATTTTAATCTCTTTGATTAGAGCCAAGCCACG
TTGTTAGATATACACACATTCTGAAGAGCCTGGAGCGCCCAGTGTTCAAG
TTTTTTTTGCCCCCCTTGTTGAGACCTTCTTTCACAAAAAAAAAAAGAGA
AATCCTCTGGTATAGCTCAGTGTTTGCCTTAGAGTCATTCACTAGGACTA
CAAAATATGTACGAACAAATAAACAACTCTTGTGTCTTATGTAATGTTGA
CCAGGAGTCAGCACATTTTTTTCCAGCTATGTGCAATTTTGAACTCACTG
CAAATTCTCCACATGGTGCTGATACAGTCTGTGAGGCCATACACTGTTGA
TATGATGACATTGCCCATGGCATATCATGGCTACTGAGATTCTGTTAGAT
TTCCCTCCAATACTCGGCAGTAGCCTCTAACTTCTATACTCTTTCCCTGT
TTTATCCATTTAAATTGAAAATTATTAAAATAATTTCGTTCCATCATGGG
ATCCTCCTAAAACGCCGAAGTGTAATTTTTTTAGAACTTATCAGCCTCGT
TATTTTAAAATAAACCCGCGCTCTTAACACCTCTAGCTTTTCAAACTTCT
CTTTTTTCAACTAAATATGCTCCGAAGAATTTCAACTCTTCCTTATTTTC
TTCAGATGTTTTAACAATCATTTCCCCTATCTTACTTCCTTTAATGTTTT
TTTCTTGCCAAAAAAACTATAGGCATTTCATTTTGCTCTTAACTTCCCTC
CGGGACAGGTTATATAATTCTCCCACTCTCCGNNNTNGGNTATATTATTT
TTATTATATCTAATANACTGGATTACTCTACTCAAATCCTCCCCATCACC
TTTTTATGTCCTCTCTTGCACATAAACGCTCTTTCATCCCTACACTCCTT
CTTATTATTTCTTCCG
CCTTACTTTNNNNAACATTGTGAGGCTGGGGCGCCXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCCTTTAAGGAATGCTTTAAATGGGG
CTTAATGGGTCATCCTCCTATGAATATGGAAGACTTTGTTGCTGGGAGTA
ATTTGAACTGTGTTGACCTGGCCCAAGAGATTTCAAAGGAGAAGAATTTC
AGTATGTGGCATAAAGACTGTTTTTGTGGTATTTTGGTGAAGAACGTGGC
TACTTTTTACCCTTGTCTGAAAAGTCTGCCTGAGGCTAAGGTGAAGAGAC
TTGGATTAATTGCATTGATTGCATTGACAAAGGAAGTTTCAAAAAAGCCC
AGCAGAGACTTTGTTCTCTGGTTAAGTCTCACAAAGAGAAGTTTGAACAA
GCATAGCAAGCTTAGAAAGGCAAAATATAAAATATATGGTTCGAGTATTA
AAGGCATACCAGGAAGTGAAATGGAGCAAAATCCTGTGTTCTAGGAAATA
ACAGATTAAGGGAGTGGGACCTTGGGGCAAGACCCTACCCAGCTGAATTT
AGAACCAGGCATGTTGGTACACACCTTTAACCCCATGAGACAGGCATGCT
GATCTCTGCATTCAAGGTCAATCTACAGAGCAAGAACCAGGATAGCCAAG
CTATGTGAAGGATTTAGAAAACATAAAGCCAGTGATAATGTAATAGTACA
AGCGGATCATGTTCTAGATCCTGTAAGCAGCAGAACTTGGCAGCTTCAGC
CATGTGGCTCTGGCTCTAGAGTTAAGAATGGAAGGAACTACTGTGACAAT
TGATGCTGGTTAGCTGGAGCTAAGACATTAACAATGACTAAGAAGAGACC
AGCATCACTGAGTTGAAATCTGGGAGTTGTTTTCTGGGAGCACAAAGAAG
CTGCGTTCCAGAGATAGTCAAGTTTGTACCTCGTGCTGCAGCTGGACTTG
GTAATGTGTAAGAGTCCACCAGGTGGTACTGGTTTTTGAGGCCTTAAGGT
GTCCTGAAAAACAGCTGAGGCTTGTCCCGGTGAAAGGCCTGGAAAGGCCC
TTGGAAAAAGTGGTACCTCCAAAGTTATTGAATGGCCCGGAATTAAGGTG
TCCAGGCACAGGTTTTGATGGTTTTACCCCTGCCCCCAGTACCTGTAAAG
CTTTTGTGAAAACCCATATTGGGGGGGAACCCCCCCCTGGTATTGAAAAT
TACTCTTCCCTGGGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no124_m04.b1 MSMg01no124_m04.b1 CHROMAT_FILE:
MSMg01no124_m04.b1 PHD_FILE: MSMg01no124_m04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:36:17 2005
         (365 letters)



>mm_chr6_104526239_104527007
          Length = 769

 Score =  578 bits (299), Expect = e-169
 Identities = 340/355 (95%), Gaps = 6/355 (1%)
 Strand = Plus / Plus

                                                                       
Query: 16  gaattc-aatgaaaagcaatttcttctaacagatactggaactcctgcatttgagccagt 74
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 gaattcaaatgaaaagcaatttcttctaacagatactggaactcctgcatttgagccagt 275

                                                                       
Query: 75  gcttcttgtgtctgaagccctgcctgcctctcgatattctctttaattcccacacatcag 134
           ||||||||||||| |||||||||||||||| | |||||||||||||||||| ||||||||
Sbjct: 276 gcttcttgtgtctaaagccctgcctgcctcccaatattctctttaattccctcacatcag 335

                                                                       
Query: 135 agtgggccccctcaaagttctcaagactgtt-tctcct---ccagtattgttctcctgta 190
           |||||||||||||||||||||||||||| || ||||||   ||| |||||||||||||||
Sbjct: 336 agtgggccccctcaaagttctcaagact-ttctctccttccccattattgttctcctgta 394

                                                                       
Query: 191 gatccatctcttcttattgacttaaaatctaaccattcgcagtcaaagtcaaatgtacgt 250
           ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |
Sbjct: 395 gatccatctcttcttattgacttcaaatctaaccattcacagtcaaagtcaaatgtactt 454

                                                                       
Query: 251 tcactctgaaaaaaatcttctgagagatccagggttctgcttgctccctaatctctgatc 310
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 tcactctgaaaaaaatcttctgagagatccagggttctgcttgctccctaatctctgatc 514

                                                                  
Query: 311 ccaaaatgatgaactgtgtcatttaaattttaatctctttgattagagccaagcc 365
           |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 515 ccaaaatgatgaactgtgtcatttaagttttaatctctttgattagagccaagcc 569


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 365
Length of database: 769
Length adjustment: 9
Effective length of query: 356
Effective length of database: 760
Effective search space:   270560
Effective search space used:   270560
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)