BAC Information

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BAC

Clone NameMSMg01-124P05
Chromosome6 (Build37)
Map Location 70,312,725 - 70,312,998
singlet/doubletsinglet
Overlap geneIgk
Upstream geneIgkv13-64, EG628571, Igkv13-62-1, EG636752, Igkv13-61-1, Igkv4-61, EG667683, Igkv4-60, Gm1077, Igkv13-57-2, Gm1418, Igkv13-57-1, Gm189, Igkv13-56-1, Igkv4-56, Igkv13-55-1, Gm1524, Igkv13-54-1, Igkv4-54, Gm1420, Igkv4-51, Gm1069, Igkv12-49, Igkv5-48, ENSMUSG00000029975, Igkv12-46, Igkv5-45, Igkv12-44, Igkv5-43, Igkv12-42, Igkv12-41, Igkv5-40-1, Igkv12-40, Gm1409, Igkv12-38, Gm1410, Igkv18-36, Igkv1-35, Igkv8-34, U29423, ENSMUSG00000053690, Igkv8-31, Igkv8-30, LOC545852, Igkv6-29, Igkv8-28, Igkv8-27, Igkv8-26, LOC667812, Igkv6-25, Igkv8-24, Igkv8-23-1, Igkv6-23, LOC667829, Igkv8-22, Igk-V8-21, EG667840, Igk-V19-20, Igk-V8-19, Igk-V8-18
Downstream geneLOC667863, Igk-V19-17, Igk-V8-16, Igk-V19-15, LOC667872, LOC620497, Igk-V19-14, LOC667889, Igk-V19-13, LOC667902, Igkv3-12-1, Igk-V21-12, Igk-V21-11, Igk-V21-10, Igk-V21-9, Igk-V21-8, Igk-V21-7, Igk-V21-6, Igk-V21-5, Igk-V21-4, Igk-V21-3, Igk-V21-2, Igk-V21-1, Igk-J1, Igk-J2, Igk-J3, Igk-J4, Igk-J5, Igk-C, Rpia, Eif2ak3, 1700011F03Rik, LOC232077, LOC619547, Thnsl2, Fabp1, Smyd1, Krcc1, Gm1070, Cd8b1, LOC100042853
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-124P05.T7 (MSMg01no124_p05.b1)MSMg01-124P05.TJ (MSMg01no124_p05.g1)
ACCAG334170AG334171
length1,2261,236
length of high quality
(start - end)
---274 (124 - 397)
definitionCHROMAT_FILE: MSMg01no124_p05.b1 PHD_FILE: MSMg01no124_p05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:36:44 2005CHROMAT_FILE: MSMg01no124_p05.g1 PHD_FILE: MSMg01no124_p05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:36:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTTTGACAGTGGGCGCTATAXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTTATTTTGGAGAACCCTTTTAGGGACCTCATAGGAAGAGGCATT
TGAGAGACTTTCCTTTAGAAGAGCTCTCTAGTATTTGTGGTATTTACTCG
AGAATGCTACGATTAGGAGAGATGAAGTATTCCGAGCACTAGGCCAAAAT
TTATTTATCTTTGACAATTCTTCTATCTATAACGTGCAGCCGAGGGTATG
TCTTTTACCTCTCTTCTAGGTATTTGAGCTCTGTACAATTACTATTCTTA
GTTTACGTTTAGATGTATGATTCCTTAATCTGGTAACCAGGGTATGAATG
TAAGTTGGAGAAAGTTAGGCTGTTCACCAATGGCATTTTTAATTTTTTCT
TTATGTTTTCCTATGCATTTAATTCTTTTATCCCATTTATTGGTGTCAAT
GCTGGGTTATCCGCCATGAAGGATGTAGGCCCTGAACAAATTACATTTAA
GGCTTTAGCACCAAGGGCTAACACAGGTCTTTGCTCTTAGCGACTGTCTT
ATTTAGGGTTTTACTGCTGCGTGAAGATACTCTGACCATGGCAAGTCTTA
TCAAACACGACATTTAATTGGGGCTGGCTTACGAATTCAGAGGTTCAGTC
CCGTTATCATCAAGGTGGGAGTCATGGTGGACAACACAGAGGCTTGGCGG
AGTCATAGCTGAGAGTTCTACTTCTTCATCCGAAGGCGTGCTCATGGAAG
ACTGACTGCCAGGAAACTAGGGTGAAAGTCTTAAGCCGCCTCCCACAGTG
ACGCGTGTTTTCAAACCCGGGTACACCTATTCCGATGAGGCTAAATGGCT
GGATGGTGCCTTTCCCTGATCCAGGAATAAAAAAACTTTTCCACTATGCA
ATGGGAATGTGGATAGTTGAGTGGGATGTTGAGCTGCCTATGTACGTTCT
AAAAATTTCCTGAAAGTGGTTTACTTTTTAATTCCTCCCCTGGTCAGGAA
CCTTTTTCCTTAGGCGGTGGACCTTGACCTAATTCTTTCTGGAAAATTAA
TATTTTTTTTTTTAATTTGGTTAAAACACCCAACGGTTGGTTTTCCCGTG
CAATTCTCCTCTCTCCAAAAAGCTCCATTTCCCTATTAGAAGGATCGGTT
TCCACCAATTACCCCTTTTCCCCTTCGAAAGGGGTGGTGGCCCTTCCCGG
TGAATCTCATAATATTTGTTATAACT
TTTTCAACCATTGGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCCTTTTTGAATTTGTTGCCATATCTGGAACTTA
GGAGCATTCTTTTGATCTGCGTTGCCTAGTAGAGAGTACTTATGAGTTCC
TTCCAGACATGGCCATTGTTTGTCTTGGACTGAATGTGTTTCAGTATGTT
GGAGATTGACAAGAGTGGAGATGAGCTCAAAGTTGTGGTCAGAGGGGCTT
CAAGTGCTCCATAGGAAAGAGGAAAACTGAGTCTCCCTGAAGTTTAAACA
GTCCCCTGCAAGATGTCTACTAAAGCTCTGGGGATGAGAGGAAGCAATAG
TAATTAGAGAACAGAAAGAAGAGTGAGAATGTCCTACCTGATCCCCATTC
TTGGAGTAAGAAAGTGGAGTTCAACAAGAGAAACTGTGGGGTGCCTCTGT
TTTTTACGCCCACCGGATGATCTGTTTCAGGGCTGGGCAAGAGAGTAGGT
AATTGAATATACAGGAGAGGGAGAAAAGTGAATATTACCTACATAATTTC
TAGTCTGTGAGGGCTAGCTGGTTTTCAGGCAAAGAGTACCTAAGGGTTTG
GTGGGTGGAAAAAAATGGATGGAGAGTGGGAAATTGACTGGTGTATGCTG
CCTGCTTGGTGGTTCAGTGTTTGACAGATCTCTGATGTCCATATTAGTTG
AGACTGCTGGTCCTCCTAAAGGGTGGTTTTCCTCCTCACCTTCTTTCCAT
CTTTCCCAAGATGGAAAGACTTCTGTCCTTTACTTGTGTGCCACTAATTG
CCTCTTACTCTTTCCGCTTACTGTTCAGTCTTTCTGAGTGCGTTCTTGCC
AGGTTCCTTATTGTGAGTGTTCCCCATCCCCAGTAATATTGTTTGGCCCT
CCAACCTCCCCTTGAACTGGTATCCCTTTTTGGGCCTCTTTGCTGAACCC
TTCTTTAACTTCAGGCTCCTCTCCATTTCCTTCCCGTGTCATTCTTTCCA
GGCCGTACCATATTATTCTCTCCAAATTTTTGTAACATGGGAAAGGCCCC
CTTCTTTTTTCATTTTGATGCCTCTGGCGCTTATCCGCTGGTGAATGTCA
TATTTTATCATTTCTCCTTCCTCCCCTTCTGGCCCGGCTATTCTTCCTTA
TAAAAAATCTCTCCCCTTTGAATTCGCTGTGTAATTTTCTTTCTCTTTCT
CAAGGCTCTCCCCTGGGCTCTCTTCTGCTTAGTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no124_p05.g1 MSMg01no124_p05.g1 CHROMAT_FILE:
MSMg01no124_p05.g1 PHD_FILE: MSMg01no124_p05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:36:45 2005
         (274 letters)



>mm_chr6_70312361_70313034
          Length = 674

 Score =  491 bits (254), Expect = e-143
 Identities = 269/274 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcctagtagagagtacttatgagttccttccagacatggccattgtttgtcttggactga 60
           |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 638 gcctagtagagagtacttatgagttcctgccagatatggccattgtttgtcttggactga 579

                                                                       
Query: 61  atgtgtttcagtatgttggagattgacaagagtggagatgagctcaaagttgtggtcaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 578 atgtgtttcagtatgttggagattgacaagagtggagatgagctcaaagatgtggtcaga 519

                                                                       
Query: 121 ggggcttcaagtgctccataggaaagaggaaaactgagtctccctgaagtttaaacagtc 180
           ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct: 518 ggggcttcaagtgctccatagaaaagaggaaaactgagtctccctgaagtttaaacaggc 459

                                                                       
Query: 181 ccctgcaagatgtctactaaagctctggggatgagaggaagcaatagtaattagagaaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 ccctgcaagatgtctactaaagctctggggatgagaggaagcaatagtaattagagaaca 399

                                             
Query: 241 gaaagaagagtgagaatgtcctacctgatcccca 274
           ||||||||||||||||||||||||||||||||||
Sbjct: 398 gaaagaagagtgagaatgtcctacctgatcccca 365


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 674
Length adjustment: 9
Effective length of query: 265
Effective length of database: 665
Effective search space:   176225
Effective search space used:   176225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)