BAC Information

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BAC

Clone NameMSMg01-125G09
Chromosome6 (Build37)
Map Location 3,959,948 - 3,960,193
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039885, LOC100039896, LOC100040185, EG667335, Samd9l, AI987662, Ccdc132, Calcr, LOC100039942, Tfpi2, Gngt1, Gng11
Downstream gene4930528H21Rik, Bet1, LOC667381, LOC100039965, Col1a2, Casd1, Sgce, Peg10, LOC100040018, Ppp1r9a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-125G09.T7 (MSMg01no125_g09.b1)MSMg01-125G09.TJ (MSMg01no125_g09.g1)
ACCAG334500AG334501
length697726
length of high quality
(start - end)
91 (18 - 108)246 (87 - 332)
definitionCHROMAT_FILE: MSMg01no125_g09.b1 PHD_FILE: MSMg01no125_g09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:37:25 2005CHROMAT_FILE: MSMg01no125_g09.g1 PHD_FILE: MSMg01no125_g09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:37:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AGGCGCTATACGACTCCTATAGGGAGAGATCCGCGGAATTCACACATACC
CAAACTTATGGGGACAATGAAGACATTTCTAAGAGGAAAACTCATAGCTC
TGAGTGCCTCCAAACAGAAACTAGAGAGAGCCACACTAACAGCTTGACAA
CACACCCAAAAGCTGTAGAACAAAAGGAAGCAAATTCCCCCAAGAGGAGT
AGACAGGAGGAAATAATCAACTCAGGAGTGAAATCAACCAAGTGGAAACA
GGGAGAACTATTCAAAGAATCAACCAAGCGAGGAGCTGGTTCTTTGAGAA
AAGCTATGAGATAGATAAACCCTTAGCCAGACTCACTAGAGTTTTTATTT
TACCCCCCCCCCCCCCCCAAATTACAAATGAAAAGGGAGACTTTTGAACC
GACCCAAAAAAAAAAAAAAACATCGGGGGAGGCTACTATTCACGCTATAC
TCCATAAAACTGCCCACAATTTCTAGACCTATACCAGGTACCACTGGTCA
ATCACGATCTGACTACAGACCCCACCAGTCCCTCTATCCTCCTCAGTAAC
CCCTTCCTTCATTAATACCCTCACCACCCTCCATTATCCCCCCCCCAGAG
CAATCTCCGGGCTCATCCCCTCTTCCTTCTTTCCATCCACACCCATTTTC
ATCCCTCTCTTACCCATCCCCATCAATAACATACACCTCGCACCCCC
ATTTCNTAATTACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCATGAACGGGTGG
CTGGATGTATAGATGGTATGCATTGCTCTGAGAGTAGCTAAGCAATAAAT
GCTTTGTTTTGACCTTTGTAAAAGATTATAGGTTATGTAGTATGAGTAAC
AAGAATATGTTTTCTTCCTTATGCAAAAATGAAAATGTGATAGATAACTA
TGAAGAAATGAACCAGGTTATTACAATAAAACTTAATAAGCACCAAAATA
CCAAAATCACATGTCATATTAAATGTTAAGTGTCCATAAGCAAAACCACA
CCCTAATTATCAGTTGTTCTATGTTTTTTGCACCCACCCCCCCCCTGACT
ACTCTTAAACTTATTCTATAGTAGATGGCACTTTGAGAAAAAATTATCCC
TGGGGTCTCAGTAACCCCAACTGATGTCATCACCTTGGAAAATAGCAGGA
ACCCCTCCCTGCGTTAAGCCTCTACATAATTACTTTTCCAAAAGCCTGAT
TATCCTGTTTCCCTTGTCACCAGCGGAAAAACTCACTTCCCTATTGAGGA
TGCTGACCCACTTCTTGTAACCTGTTGCAGCCCCCGTCCCCTCCTGACTT
TGCCTTGGACGAACACCACGAAACCTAATGCTTATTTAAGACCCCTCGGA
GGACACAACTCCCCTTTTACCCCCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no125_g09.g1 MSMg01no125_g09.g1 CHROMAT_FILE:
MSMg01no125_g09.g1 PHD_FILE: MSMg01no125_g09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:37:26 2005
         (246 letters)



>mm_chr6_3959748_3960393
          Length = 646

 Score =  476 bits (246), Expect = e-139
 Identities = 246/246 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcatgaacgggtggctggatgtatagatggtatgcattgctctgagagtagctaagcaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tcatgaacgggtggctggatgtatagatggtatgcattgctctgagagtagctaagcaat 387

                                                                       
Query: 61  aaatgctttgttttgacctttgtaaaagattataggttatgtagtatgagtaacaagaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 aaatgctttgttttgacctttgtaaaagattataggttatgtagtatgagtaacaagaat 327

                                                                       
Query: 121 atgttttcttccttatgcaaaaatgaaaatgtgatagataactatgaagaaatgaaccag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 atgttttcttccttatgcaaaaatgaaaatgtgatagataactatgaagaaatgaaccag 267

                                                                       
Query: 181 gttattacaataaaacttaataagcaccaaaataccaaaatcacatgtcatattaaatgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gttattacaataaaacttaataagcaccaaaataccaaaatcacatgtcatattaaatgt 207

                 
Query: 241 taagtg 246
           ||||||
Sbjct: 206 taagtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)