BAC Information

Click to search

BAC

Clone NameMSMg01-125G14
Chromosome6 (Build37)
Map Location 55,685,447 - 55,827,015
singlet/doubletdoublet
Overlap geneCcdc129
Upstream geneZnrf2, Nod1, A030007L17Rik, Gars, Crhr2, Inmt, C330043M08Rik, Aqp1, Ghrhr, Adcyap1r1, LOC100042219, Neurod6, LOC100041339
Downstream geneGsbs, LOC100041357, Pde1c, EG666688, Lsm5, 5830411G16Rik, LOC100042288, Kbtbd2, Fkbp9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-125G14.T7 (MSMg01no125_g14.b1)MSMg01-125G14.TJ (MSMg01no125_g14.g1)
ACCAG334510AG334511
length709724
length of high quality
(start - end)		579 (58 - 636)576 (72 - 647)
definitionCHROMAT_FILE: MSMg01no125_g14.b1 PHD_FILE: MSMg01no125_g14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:37:26 2005CHROMAT_FILE: MSMg01no125_g14.g1 PHD_FILE: MSMg01no125_g14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:37:27 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,685,447 - 55,685,883)(55,826,443 - 55,827,015)
sequence
TGGGCCGCTAAACGACTCCTATATCCAGAGGATCCGCGGAATTCCACCCA
TGTGCGTGTCTTACGCTGGGTCAGTTCTGGTCCCATGTCTGAGTGTGTAG
CATCTTCCACATTTTTGTGAAATTTCCTGGGTCTTTGTACCTGAAAGGCA
TTTCTTTTTCTTGTTTGAGTAGATAGTTATGGTTTGCAAGGGTAAGCAAC
CCTATCTTTAAAATGCTCTTGAGGTTAAGGAGATTCGGACACTCTTATGG
CTTATGGTTCAAATGTCAACTTGATACAAATTAGAACCACTGGAGTAGGA
AGCCTCACCAGAGGAGGTTCCTGATTGGTTGATGTGGAATAGACCTTGAC
TGTGGGCATCACTTTCTGGTAGCAGCACTAGCTACTGGATATGAAATAAA
TAAAATGAAAATAAAAGGGGCTTGGCAGAAGAGAGATCGTCTTGTCTCTT
GCTAATTAGACTGTCTATCTTGCCACTGAGATAATTTACACTTTGTTCGT
ACCCATTCCTTTACTGAAATCAGAATCTGCATTTATGGCCTTTAATCATG
GACAAGGGACCCATGCCTCTCCAAGAATCTTCTAGGCTTCTGGTACCAAA
CTGGGACTATTGGCTCAATAAGCCTTTGGACTGAGCAACTCCCAAGTAAG
AGCTTTAGTAATGGCCAGCTCTTGTGGGACTACCTTGACTGCCGAAGCAC
CCAGCCTTA

CATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCTAAGCTCTATGCACATATATTCTCCTGGA
AGCCTGCAAGTCTAGCTTCCTGCCTGCTTGAAACTATCTTTGACCAAAAG
TCATAGCACTTCACATTCAAATTCTTCGACTGCAACAGAAGAATGAGAAC
CAGCCATGTTCCCACATGGGTTACTGAGTTCCAAATATGACCAATGAGAA
AGGACTTGGGGGACAAAAGCTCAGTTAGCTTATAGAAGAAGGCTTTGTTA
AAAAGCCTTGCTGAAGACTAACAAGCTGCCAAGTAAAAGCTGTGCCCTCT
GATCTCAGAGTCACACAGAGACCCTGCTTCCCTCCTGGCTGTGCCTTTAT
ACTTTATAGTTCACTAACTTGGCTCTGATGAAGCCAGACCATGAGTTGTA
TTTTCCAGGAAGTACAGTGTAACCAAAGGAAGGAAGAATGCCGGCCTCAC
AGCATGACATAAACAAGAGTCAAAGACAGGTCTGTGTGATAAAATATATT
TATGTTTCTGTCTCTTCCTTGAGTGTGAATTGATATGAATAGAGAGGCCA
TCATATTCAATTTATTGGAAGCATGTTCTGAAATTTTGACATCAAGGAGG
TCTTATGTTAAAAATAAAGTGATTTAATTGAAATGTGGTTAAATTGCCTT
CTAAAACCTCATGTTTCTATCCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no125_g14.b1 MSMg01no125_g14.b1 CHROMAT_FILE:
MSMg01no125_g14.b1 PHD_FILE: MSMg01no125_g14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:37:26 2005
         (579 letters)



>mm_chr6_55685105_55686083
          Length = 979

 Score =  791 bits (409), Expect = 0.0
 Identities = 430/437 (98%)
 Strand = Plus / Plus

                                                                       
Query: 143 ccctatctttaaaatgctcttgaggttaaggagattcggacactcttatggcttatggtt 202
           ||||||||||||||||||||||||||||| |||||||||||||||||||  |||||||||
Sbjct: 343 ccctatctttaaaatgctcttgaggttaaagagattcggacactcttatttcttatggtt 402

                                                                       
Query: 203 caaatgtcaacttgatacaaattagaaccactggagtaggaagcctcaccagaggaggtt 262
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 caaatgtcaacttgatacaaattagaaccactggagtaggaagcctcaccagaggaggtt 462

                                                                       
Query: 263 cctgattggttgatgtggaatagaccttgactgtgggcatcactttctggtagcagcact 322
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 463 cctgattggttgatgtggaatagaccttgactgtgggcatcgctttctggtagcagcact 522

                                                                       
Query: 323 agctactggatatgaaataaataaaatgaaaataaaaggggcttggcagaagagagatcg 382
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 523 agctactgaatatgaaataaataaaatgaaaataaaaggggcttggcagaagagagatca 582

                                                                       
Query: 383 tcttgtctcttgctaattagactgtctatcttgccactgagataatttacactttgttcg 442
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 583 tcttgtctcttgctaattagactgtctatcttgccactgagataatttacactttgttct 642

                                                                       
Query: 443 tacccattcctttactgaaatcagaatctgcatttatggcctttaatcatggacaaggga 502
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 tacccattcctttactgaaatcagaatctgcatttatggcctttaatcatggacaaggga 702

                                                                       
Query: 503 cccatgcctctccaagaatcttctaggcttctggtaccaaactgggactattggctcaat 562
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 cccatgcctctccaagaatcttctaggcttctggtaccaaactgggactattggctcaat 762

                            
Query: 563 aagcctttggactgagc 579
           |||||||||||||||||
Sbjct: 763 aagcctttggactgagc 779


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 979
Length adjustment: 10
Effective length of query: 569
Effective length of database: 969
Effective search space:   551361
Effective search space used:   551361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no125_g14.g1 MSMg01no125_g14.g1 CHROMAT_FILE:
MSMg01no125_g14.g1 PHD_FILE: MSMg01no125_g14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:37:27 2005
         (576 letters)



>mm_chr6_55826243_55827218
          Length = 976

 Score = 1069 bits (553), Expect = 0.0
 Identities = 568/573 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   taagctctatgcacatatattctcctggaagcctgcaagtctagcttcctgcctgcttga 60
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| 
Sbjct: 773 taagctctatgcacatatattctcctggaggcctgcaagtctagcttcctgcctgcttgt 714

                                                                       
Query: 61  aactatctttgaccaaaagtcatagcacttcacattcaaattcttcgactgcaacagaag 120
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 713 aactatctttgaccaaaagtcatagcacttgacattcaaattcttcgactgcaacagaag 654

                                                                       
Query: 121 aatgagaaccagccatgttcccacatgggttactgagttccaaatatgaccaatgagaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 aatgagaaccagccatgttcccacatgggttactgagttccaaatatgaccaatgagaaa 594

                                                                       
Query: 181 ggacttgggggacaaaagctcagttagcttatagaagaaggctttgttaaaaagccttgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 ggacttgggggacaaaagctcagttagcttatagaagaaggctttgttaaaaagccttgc 534

                                                                       
Query: 241 tgaagactaacaagctgccaagtaaaagctgtgccctctgatctcagagtcacacagaga 300
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 533 tgaagactaacaagctgccaagtaaaagctgtgccctctgacctcagagtcacacagaga 474

                                                                       
Query: 301 ccctgcttccctcctggctgtgcctttatactttatagttcactaacttggctctgatga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 ccctgcttccctcctggctgtgcctttatactttatagttcactaacttggctctgatga 414

                                                                       
Query: 361 agccagaccatgagttgtattttccaggaagtacagtgtaaccaaaggaaggaagaatgc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 agccagaccatgagttgtattttccaggaagtacagtgtaaccaaaggaaggaagaatgc 354

                                                                       
Query: 421 cggcctcacagcatgacataaacaagagtcaaagacaggtctgtgtgataaaatatattt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 353 cggcctcacagcatgacataaacaagagtcaaagacaggtctgtgtgataaaatatactt 294

                                                                       
Query: 481 atgtttctgtctcttccttgagtgtgaattgatatgaatagagaggccatcatattcaat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 atgtttctgtctcttccttgagtgtgaattgatatgaatagagaggccatcatattcaat 234

                                            
Query: 541 ttattggaagcatgttctgaaattttgacatca 573
           |||||||||||||||||||||||||||||||||
Sbjct: 233 ttattggaagcatgttctgaaattttgacatca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 976
Length adjustment: 10
Effective length of query: 566
Effective length of database: 966
Effective search space:   546756
Effective search space used:   546756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |