BAC Information

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BAC

Clone NameMSMg01-125I24
Chromosome6 (Build37)
Map Location 87,589,816 - 87,590,336
singlet/doubletsinglet
Overlap gene2010301N04Rik
Upstream geneMxd1, 2610209M04Rik, Gmcl1, Anxa4, 2610306M01Rik, Aak1, LOC100043555, Nfu1, Gfpt1, D6Ertd527e, Antxr1, Gkn1, Gkn2, 1190003M12Rik, Bmp10, Arhgap25, Prokr1
Downstream gene1810020O05Rik, AB041550, LOC100043118, EG545864, Gp9, Rab43, Isy1, Cnbp, Copg, 8430410A17Rik, LOC665416, H1fx, EG434064, LOC100043131, Rab7, Rpn1, Gata2, Dnajb8, Eefsec, Ruvbl1, Sec61a1, 4933428M03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-125I24.T7 (MSMg01no125_i24.b1)MSMg01-125I24.TJ (MSMg01no125_i24.g1)
ACCAG334616AG334617
length747738
length of high quality
(start - end)
269 (62 - 330)518 (70 - 587)
definitionCHROMAT_FILE: MSMg01no125_i24.b1 PHD_FILE: MSMg01no125_i24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:37:38 2005CHROMAT_FILE: MSMg01no125_i24.g1 PHD_FILE: MSMg01no125_i24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:37:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGGCGCTATACGACTCCTATAGGTCGACATCCGCGGAATTCTATATCTG
TTGTGCAGAGAAACCAAGGCCGCAGCAACTCTTATAAAGGACAACATTTA
ATTTTGGCTGGCTTACAGTTTTAGAAGTTTAATCCATTCTTGTCATGGTG
GGAAGCATGACACCACACAGGCAGACGTGGTGCTGGAGAAGGAGCTGAGA
GTTCTACATCAGGATGGGCAGACAGCAGGAAAAGACAGTGAGCCACTAGG
CCTGGCTTGAACTTTCTTCCTCTTCTTCTTCTTCCTCTTCTTGATTTATT
TATTTATTATATGTAAGTACACTGTAGCTGTCCTCACACACTCCAGAAGA
GGGCATCAGATTTCATTACCCATGCTTGTGACCCCCCTTGTGGCTGCCGC
GACTCGCCCCCCCTACCCTCGTAAGACTATTCCCCGTTCTTCACCTCTGA
TTCCTTCTGCCACCCCCCTGCCTTTCCCCCTCCCACCCCCCTCCCTCTCC
CCGTTCCGTCCCCTTCTCTCCCGCCACATCCCCTCCCTTACGTCCCCCCC
CCATCTCCCCACTCCCCCTCCCTCCCTTCCCACCTCACCCCCCCTACCTC
TTTTCTCACCTCCCTTTACTCTCTCCCTACCCTTCCCCCCCTTCTTCTCC
CCCCCCCCCTTTCCTCCCCCCTCTCCTCCTCCCCCCTCACCCTTATTCTC
TTCCCCCACCTCCACCCCCTTCTCCCCTCATTATCCCCCCCGCCCCC
TGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCAGGTCCTTCTCCAGCACCATGTCTGCCTG
GATGCTGCCATGTTCCTGTCTTGATAATACTGGACTGAACCTCTGAACCT
GTAAGCCAGCCCCAACTAAAATGTTGTCCTTTGTAAGAGTTGTTGCCTTA
GTCATGGTGTCTGTTCACATCAGTAAAACCCTACGACAGGCAGCTAAAGG
ATGGCAGGCTGAGATGGACGGGACTGTAACTTTCAAAGGGAAGATGAAGA
TGCAGTGTCATAGACAGGACGCATTGACCAGCACTGCAGCTCCACGGTCA
CTCCTGCATCTAGTCTCTTCCTTCCACCCCCACCCCCCCACTCCCTGGAA
CTCAGAGGGCCTGTCTACTTGATGCCTCTGGTGGAAAGGAGCTTCCGTTT
CCTCCGAGACCTGGTTATCTTCACAGGGCTCTCTGCAGTCTTAACTCACC
CTCCCTCCCTGGTAGCTTGGCCAGTGCTGTAGGCCCAGTGTAGACCCAGT
GGTTCAGCACTGATTCTTCTAAGGATTCCTGGGCACAGGACAGCGCAGGA
ACCCATGACTTCCAAAGCTCAAACAGGAAACTTTCAGTGGCCTACCCCAC
CCCCCAATCTCTGAGGCATGATCCATAGCCAGGAAGACAGCTTCTCCAGC
ACCTGTATGCTGTGCGGTCTCCAGTACCATGTCTGCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no125_i24.g1 MSMg01no125_i24.g1 CHROMAT_FILE:
MSMg01no125_i24.g1 PHD_FILE: MSMg01no125_i24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:37:39 2005
         (518 letters)



>mm_chr6_87589616_87590536
          Length = 921

 Score =  969 bits (501), Expect = 0.0
 Identities = 515/521 (98%), Gaps = 3/521 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcaggtccttctccagcaccatgtctgcctggatgctgccatgttcctgtcttgataata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcaggtccttctccagcaccatgtctgcctggatgctgccatgttcctgtcttgataata 260

                                                                       
Query: 61  ctggactgaacctctgaacctgtaagccagccccaactaaaatgttgtcctttgtaagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctggactgaacctctgaacctgtaagccagccccaactaaaatgttgtcctttgtaagag 320

                                                                       
Query: 121 ttgttgccttagtcatggtgtctgttcacatcagtaaaaccctacgacaggcagctaaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgttgccttagtcatggtgtctgttcacatcagtaaaaccctacgacaggcagctaaag 380

                                                                       
Query: 181 gatggcaggctgagatggacgggactgtaactttcaaagggaagatgaagatgcagtgtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gatggcaggctgagatggacgggactgtaactttcaaagggaagatgaagatgcagtgtc 440

                                                                       
Query: 241 atagacaggacgcattgaccagcactgcagctccacggtcactcctgcatctagtctctt 300
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atagacaggacgcagtgaccagcactgcagctccacggtcactcctgcatctagtctctt 500

                                                                       
Query: 301 ccttccacccccacccccccac---tccctggaactcagagggcctgtctacttgatgcc 357
           |||||||||||||||||||| |   |||||||||||||||||||||||||||||||||||
Sbjct: 501 ccttccacccccacccccccccctctccctggaactcagagggcctgtctacttgatgcc 560

                                                                       
Query: 358 tctggtggaaaggagcttccgtttcctccgagacctggttatcttcacagggctctctgc 417
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tctggtggaaaggagcttccgcttcctccgagacctggttatcttcacagggctctctgc 620

                                                                       
Query: 418 agtcttaactcaccctccctccctggtagcttggccagtgctgtaggcccagtgtagacc 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agtcttaactcaccctccctccctggtagcttggccagtgctgtaggcccagtgtagacc 680

                                                    
Query: 478 cagtggttcagcactgattcttctaaggattcctgggcaca 518
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cagtggttcagcactgattcttctaaggattcctgggcaca 721


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 921
Length adjustment: 10
Effective length of query: 508
Effective length of database: 911
Effective search space:   462788
Effective search space used:   462788
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)