GGCGGCGCTAAACGACTACTATATCCAGAGAATCCGCGGAATTCTCTCAA
ATATTACAAATATTAACACTCCCTGTCCTCCTTGGGTTGAACATCTGTTG
GCAGTGACATTGGGTGGGACATAGAGGGCTTTTCTTTCTCCATGTCTGCT
GGCTATAGGGGCACTTGCATTGTCTACCCATCCTCTAGTTCTTGGTGGGC
TGTTGTCATTGTCTTGGGATTTCAGGGGCTTCTCTGTAACTGGGAAATCC
CTCTACTATGGACGTGGTTCCCATGGGCTCAGCTGGGTCTGCTTTTATCT
TGTCCCAGGCAACTGGCAGGACTGTCAGAGTTGGAGAATTACTGGAAAGT
CCACCTGATTAGACTGCTATTCTCAAGGTGGATGGCTCAGGAAGCTCACC
CGAAGGGTTTAACACACCCAGTGCTTCCAAGTGGGGGTCCAGCCTCATCT
GGAGACTTGGAACACCCCACACTGACTGCGCCATACTCTACAAATTTGGT
TTCCAAAGGAAGCCCTTCAATATCATTCTGGTTTTCTGCTAACCAGAATG
GGATCAGGGACTTAGGAGCAGTGCCTTGCCCTGGTGGTTTCAGTGTTTAT
CCAGGGAAGATAACCATGGTCAACGAACAGGCAACCCTGTCTTGGGGGTG
TGATAGACTGTCAACTGCCCCAGACTACAGCTGGAACAACACTGCTTATT
CTAGN

TCAATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATAGTCAGGCCACAAAGCCCTCCAGGC
CTACATCATTCCTAGTTTGTAAGAGAATACTTTCAATAATACATGTGTGT
GCACACATATAATTTCATGTTTCCTAGACTGTAAAATTTCTCTATGAAAC
ACAAGACTTCAGCCACTTCCTCAACATGCCTGCTGAGGCCAGCAGGAAGT
TATAACTGCAGGTTTTAGGTTTGCTGGTGAAGACATTCTGGAAGCTTCTT
GATGAGGTCTTCACGTGGAGACCCCAATGACAAAGTCACTGTCAGTCAGA
ACTTACTGTATGGAGTAACCTTGAACTCCATATAAGAAATCTTTAAAAAA
TATAGTAACACCACCATAGTCTATAACTGACAAAACTGTTTCTTGGGTCC
CTGAACCTGAAATTGAAAGACTGGAAGAGATGAGCACAGCCCTCCAAGAG
ATAAATAGAAAGCGAATTAGCTTCCCCCATGCTTAAAAATGTCCATGAGT
GAAAATATTCATGAGCAGTAGTCAGTGGTTTGCAGGATTCCTTCCCTGGT
CCCTGCGTTCTCTGGCAGGCTGGGCACTGGTGGGAACTGATTGGTGGATG
TGGTAAACCGACCAGCATAGCTCTTTGTGAAGGGAATTAATAACATGAAA
ACATAGCAATTAACCTTA

Query= MSMg01no125_o08.b1 MSMg01no125_o08.b1 CHROMAT_FILE:
MSMg01no125_o08.b1 PHD_FILE: MSMg01no125_o08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:38:04 2005
         (506 letters)



>mm_chr6_140916160_140917065
          Length = 906

 Score =  978 bits (506), Expect = 0.0
 Identities = 506/506 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatattaacactccctgtcctccttgggttgaacatctgttggcagtgacattgggtggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatattaacactccctgtcctccttgggttgaacatctgttggcagtgacattgggtggg 260

                                                                       
Query: 61  acatagagggcttttctttctccatgtctgctggctataggggcacttgcattgtctacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acatagagggcttttctttctccatgtctgctggctataggggcacttgcattgtctacc 320

                                                                       
Query: 121 catcctctagttcttggtgggctgttgtcattgtcttgggatttcaggggcttctctgta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catcctctagttcttggtgggctgttgtcattgtcttgggatttcaggggcttctctgta 380

                                                                       
Query: 181 actgggaaatccctctactatggacgtggttcccatgggctcagctgggtctgcttttat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actgggaaatccctctactatggacgtggttcccatgggctcagctgggtctgcttttat 440

                                                                       
Query: 241 cttgtcccaggcaactggcaggactgtcagagttggagaattactggaaagtccacctga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttgtcccaggcaactggcaggactgtcagagttggagaattactggaaagtccacctga 500

                                                                       
Query: 301 ttagactgctattctcaaggtggatggctcaggaagctcacccgaagggtttaacacacc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttagactgctattctcaaggtggatggctcaggaagctcacccgaagggtttaacacacc 560

                                                                       
Query: 361 cagtgcttccaagtgggggtccagcctcatctggagacttggaacaccccacactgactg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cagtgcttccaagtgggggtccagcctcatctggagacttggaacaccccacactgactg 620

                                                                       
Query: 421 cgccatactctacaaatttggtttccaaaggaagcccttcaatatcattctggttttctg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cgccatactctacaaatttggtttccaaaggaagcccttcaatatcattctggttttctg 680

                                     
Query: 481 ctaaccagaatgggatcagggactta 506
           ||||||||||||||||||||||||||
Sbjct: 681 ctaaccagaatgggatcagggactta 706


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 906
Length adjustment: 10
Effective length of query: 496
Effective length of database: 896
Effective search space:   444416
Effective search space used:   444416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no125_o08.g1 MSMg01no125_o08.g1 CHROMAT_FILE:
MSMg01no125_o08.g1 PHD_FILE: MSMg01no125_o08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:38:05 2005
         (600 letters)



>mm_chr6_140998832_140999831
          Length = 1000

 Score = 1160 bits (600), Expect = 0.0
 Identities = 600/600 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   atagtcaggccacaaagccctccaggcctacatcattcctagtttgtaagagaatacttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 atagtcaggccacaaagccctccaggcctacatcattcctagtttgtaagagaatacttt 741

                                                                       
Query: 61  caataatacatgtgtgtgcacacatataatttcatgtttcctagactgtaaaatttctct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 caataatacatgtgtgtgcacacatataatttcatgtttcctagactgtaaaatttctct 681

                                                                       
Query: 121 atgaaacacaagacttcagccacttcctcaacatgcctgctgaggccagcaggaagttat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 atgaaacacaagacttcagccacttcctcaacatgcctgctgaggccagcaggaagttat 621

                                                                       
Query: 181 aactgcaggttttaggtttgctggtgaagacattctggaagcttcttgatgaggtcttca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 aactgcaggttttaggtttgctggtgaagacattctggaagcttcttgatgaggtcttca 561

                                                                       
Query: 241 cgtggagaccccaatgacaaagtcactgtcagtcagaacttactgtatggagtaaccttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 cgtggagaccccaatgacaaagtcactgtcagtcagaacttactgtatggagtaaccttg 501

                                                                       
Query: 301 aactccatataagaaatctttaaaaaatatagtaacaccaccatagtctataactgacaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 aactccatataagaaatctttaaaaaatatagtaacaccaccatagtctataactgacaa 441

                                                                       
Query: 361 aactgtttcttgggtccctgaacctgaaattgaaagactggaagagatgagcacagccct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 aactgtttcttgggtccctgaacctgaaattgaaagactggaagagatgagcacagccct 381

                                                                       
Query: 421 ccaagagataaatagaaagcgaattagcttcccccatgcttaaaaatgtccatgagtgaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ccaagagataaatagaaagcgaattagcttcccccatgcttaaaaatgtccatgagtgaa 321

                                                                       
Query: 481 aatattcatgagcagtagtcagtggtttgcaggattccttccctggtccctgcgttctct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 aatattcatgagcagtagtcagtggtttgcaggattccttccctggtccctgcgttctct 261

                                                                       
Query: 541 ggcaggctgggcactggtgggaactgattggtggatgtggtaaaccgaccagcatagctc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ggcaggctgggcactggtgggaactgattggtggatgtggtaaaccgaccagcatagctc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1000
Length adjustment: 10
Effective length of query: 590
Effective length of database: 990
Effective search space:   584100
Effective search space used:   584100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)