BAC Information

Click to search

BAC

Clone NameMSMg01-126A07
Chromosome6 (Build37)
Map Location 10,317,950 - 10,318,391
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC330264
Downstream geneLOC100040285, LOC667650, AA545190
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-126A07.T7 (MSMg01no126_a07.b1)MSMg01-126A07.TJ (MSMg01no126_a07.g1)
ACCAG334950AG334951
length1,427698
length of high quality
(start - end)
---442 (74 - 515)
definitionCHROMAT_FILE: MSMg01no126_a07.b1 PHD_FILE: MSMg01no126_a07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:38:14 2005CHROMAT_FILE: MSMg01no126_a07.g1 PHD_FILE: MSMg01no126_a07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:38:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCCTTTTTTTCTATTTNCCTCTTTTTCCCCTTTTTNTTTTTTCNTTCCT
TCTCCTNTCTCTCCCCAACACAGAGATTCGTCNTCTGTTCTCTCTNNCTN
NTTNNNCTCCTTTCCCTCTNCACTAANTATATATTNTCNCNCCTTTTTAT
TTTTTTCCCTTCCCTCTTCTTTTNNTTTTTCCTCTTACCTTNTCCTTTTT
CTCTCTCCTTTCTTCTTTCTCTCTTCCTCCTCGCTCCCCCTTTTTTTTCT
CTATTTTTTGTTCAATAACATAAGACCGATGTATTGTAACCGGANCGCAA
ATGCACTATCGTCAACACCNNCCTATAACATATCCCCTCCACCGTGCTGA
TTTCTTGTTGATGTCCTTGCTCGTCTTTTGTTCTCGATTCACAATACACC
TTATATACCTACTTAAATCACATTTATCTCTCGCACCTAACTCATATTAC
TCCCCNATATTATCGGCCCTTATAGTCACCGCGCCGCCTACGTCCGCGCT
AAGCACATGCGATAATGAGGAGGACGACGCCAGCGTATTGCTATGCTCCC
TGAACTTAGAGATGATAGTAGTAGACAACGCGCCGNCATAGACGCGCAGA
CAACGCGANAAGACCAAATAGAATAACGGGCGCCGCAGAATAACCGCGTC
CGTAGCGCGCTTATAACGGCGGGAATATGCGACGGTTGAAGTTATGCGCG
TATGACGCGGCTATAGTATCGGTTTATATNCGCCTGAATACTGGGAACAN
CTCCTGTGGCCGCGCGCGCTCAGCTCGCGTCGTGACAATNCGTATCAGTG
CCCGCACTCCTACATAGACCGCTTGTCTCCGCGTTACTGGCACACCCGCA
TACACATATTATTTTGGCTGTGTTCTCACTGCCCCTTATCTCTATATCCC
GCCACGTGTTAGGTTTCGTGCNCCCTCTATACGCGACGCCTATATGACTT
CGTCTGCTGTAGTAGCGAGCGTGTAAGGGTACGACGCGAATGAGAGATAT
ACAGCGCGAGTAGAGAGCGCGACGGAGAATGACGCGCACAGGATACAANC
ATCAATACAACTACGACGATTATACGCACGCGCCGCCGTGCTCTGAGATG
CAGTCTNTGTTACTCCCTCGCAATATGAGACGGGTACGACAAGGAGATCC
GACGTCAACACAGAGTATACCTCGCCGCACCCACACACACTACATATAAT
ATCGCCTTATATAATCGACGTCGGTATACGAACACACAACCACTGACACG
ACCATATATAAATATGATTCACACGCGATACGATAATGAAANAACCGCGG
AATATGACACCATATCCGGATATTAAAACGAACAGCCCGTAACGAATTAG
CACGCCACTGATAACTATTAAGCCTCACATTGTACACGCTACCCCACGAT
AAGCGCCGCGTGACACGATATATAACG
CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAACTGAGGAAGTCTGAATAATATGAGC
TTGAAGTTATCTGTTGGTGGGGTCAGTTAAACTCCTCAGGTAGATGTTTT
ACATGTTCTCTTAGTTCTCAACTATGACACAGATGATAGGGATATTAAAA
AGTCTGAATGCATACCTTCATTTGTTTGCTTTGAGTAGTGTTTCCACATA
AAAATCTTTAATTTGTGTAGCAGTTTCAAAAGAAAACATTAAAATGTACT
TTATGAGTGAAATTGGTTGATACTCATAAATCCAATGAAACAATTCTGGA
GATTATTGCACTCTACAAGCATCAAATACTCTACCATTTAATATAAATCG
GATTATTTACTAGGAACAGTTGATATGATCAGGAGTTTTTATGGTACTGG
CCTGGTTAAAGTAATTTGTTAGGTTCACATGACATTGTTAACTTTTAGTA
CATTTTACTATTTTACAACTTGCCTTCATTGGTATATGCTATTCTTTATC
ACCACCATCACCTTCTTCTTCTCCTTCTTCTCCTTCTCCTTCTCCCTCTC
CTTCTCCTTCTCCTTCTCCTTCTTCCCCTCCTTCTCCTTCTCCGTCCTTT
TTCTTCTTTCTTCCTCCTCTTCTTCTTCTTCTTCTTTTTCTTCTTCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no126_a07.g1 MSMg01no126_a07.g1 CHROMAT_FILE:
MSMg01no126_a07.g1 PHD_FILE: MSMg01no126_a07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:38:14 2005
         (442 letters)



>mm_chr6_10317750_10318591
          Length = 842

 Score =  808 bits (418), Expect = 0.0
 Identities = 436/442 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aactgaggaagtctgaataatatgagcttgaagttatctgttggtggggtcagttaaact 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 201 aactgaggaagtctgaataatatgagcttgaagttatctgttggtggggtcagttatact 260

                                                                       
Query: 61  cctcaggtagatgttttacatgttctcttagttctcaactatgacacagatgatagggat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 261 cctcaggtagatgttttacatgttctcttagttctcaactatgacacagatgataggaat 320

                                                                       
Query: 121 attaaaaagtctgaatgcataccttcatttgtttgctttgagtagtgtttccacataaaa 180
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attgaaaagtctgaatgcataccttcatttgtttgctttgagtagtgtttccacataaaa 380

                                                                       
Query: 181 atctttaatttgtgtagcagtttcaaaagaaaacattaaaatgtactttatgagtgaaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atctttaatttgtgtagcagtttcaaaagaaaacattaaaatgtactttatgagtgaaat 440

                                                                       
Query: 241 tggttgatactcataaatccaatgaaacaattctggagattattgcactctacaagcatc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggttgatactcataaatccaatgaaacaattctggagattattgcactctacaagcatc 500

                                                                       
Query: 301 aaatactctaccatttaatataaatcggattatttactaggaacagttgatatgatcagg 360
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 501 aaatactctaccatttaatataaatcggattatttactaggaaaagttgatatgatcagg 560

                                                                       
Query: 361 agtttttatggtactggcctggttaaagtaatttgttaggttcacatgacattgttaact 420
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 561 agtttttatggtactggcctggctaaagtaatttgttaggttcacatgacattgttaact 620

                                 
Query: 421 tttagtacattttactatttta 442
           ||||||| ||||||||||||||
Sbjct: 621 tttagtaaattttactatttta 642


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 842
Length adjustment: 9
Effective length of query: 433
Effective length of database: 833
Effective search space:   360689
Effective search space used:   360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)