BAC Information

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BAC

Clone NameMSMg01-126I23
Chromosome6 (Build37)
Map Location 30,797,487 - 30,873,532
singlet/doubletdoublet
Overlap geneCopg2, Tsga13
Upstream gene4631427C17Rik, D330017J20Rik, 1700023L04Rik, 1700080G18Rik, Nrf1, Ube2h, Zc3hc1, 2410127E18Rik, 2700094F01Rik, 1700025E21Rik, Cpa2, Cpa4, Cpa5, Cpa1, Tsga14, Mest, Copg2
Downstream geneKlf14, LOC100038973, AB041803, Mkln1, Podxl, EG619959, LOC620104
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-126I23.T7 (MSMg01no126_i23.b1)MSMg01-126I23.TJ (MSMg01no126_i23.g1)
ACCAG335342AG335343
length712707
length of high quality
(start - end)
450 (70 - 519)456 (70 - 525)
definitionCHROMAT_FILE: MSMg01no126_i23.b1 PHD_FILE: MSMg01no126_i23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:39:00 2005CHROMAT_FILE: MSMg01no126_i23.g1 PHD_FILE: MSMg01no126_i23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:39:00 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,797,487 - 30,797,936)(30,873,077 - 30,873,532)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAAGGGGCGGAATT
CCTATAGCTGTCCAATAGTGGTGTACATCTTTACATGGAATATGACTGAA
GCAGCTATTTTGGAAAACCAGAGTCTGGTGTAATCTATAAAATGCAGAGG
TATATATGGTAACCCTATACTTCTATATATACTGTAAAGAAGTATATGCT
TAAACATTAAAAATAGGGATGGAGACTGCTGTGGTTTGAATGTGTTCCTC
AGAAGTGCATGCATCAAAAACTTGACCCTCAAATCCATATGCTAATGCTA
TTTATAGAGAAGCCTTTGGGGGTTAATTCGGATTAGATGGCACCATGGGG
GTTGGGCCACTTAACAACATGAGGAACGCTATAATAGAAGACACCTCAAG
TAACACCCTTGCTGTCTCGCCAGGTGAGACAACCAGGTTTTCCAGATGCT
GAGCAAATGCCAGAAGCATGCTCTTGCCTTCCCAACCTCTAAAATTGAGC
CAAATCCAACATTTCTTAGAAAAAGTTTCTTGGTTTTAGATAATGATGGC
ACTTACAATGTGATATGTTCTAATAAACCCATTTTTTGAATTTAACTTTA
TTTGTAATTCATTTTTTACACTCCATATTTCATTCCCTGCCCCTCCCCAT
TCACCCTCAGATTGCTCCATATTCCACACCTTCTCCCCATTCATCTCTTT
CCCCCGTGTATN
TAAAGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAAGAGCCATGAATAACAATTTTTCTTAGATG
GAAAAACACTGAGTTGAGAGACATATTTCAATGAAATGAGTATTTAAAAA
TCAAAGGAATACAGTGGTGAGCATGATAGTCTGAAGGAAATATCCGTGTA
TTTAGTAATGATTTAAAGTTTTCAACATGCAAATTTTCAAAGCTCATTTC
AGGTGGCAAAAGAGGGAGACTGGATCTGTTTGTCCATAATGCACTAGACC
CATTCTATTGTGTGGCTTTCTGGCCCCACAGTGGATCTCATTTCCTTAGG
GTCCTGTTCTCGAACATTTACCTGGACAGATTCTTTGGGACATGTGTTAA
ACCTGCTTCCCCATCTGCAAAAACCATGCCATTTTGAATCCACAAAAGGA
TGCCCAAGGTATCTTTTGATCTTTGTGGTAGTCTTCTTATCTAAATTTTC
TGCAACTGCCTGGATTTCCTCTGATGGAAGGAGAGCCCTCCAATTGTTTT
TATTAAGACATTCTACCTGTCACCATCAGATGGTGACTTTCAATCGGTTC
CTGGACCCTGTGGGCATAATTTTCAGTTGGCACCTTGCGTCCATTTCTTT
CCTCTTTATTACCATCTCTTGGAATCGTTCCCACCGCCATAATTTTTACT
ATAACAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no126_i23.b1 MSMg01no126_i23.b1 CHROMAT_FILE:
MSMg01no126_i23.b1 PHD_FILE: MSMg01no126_i23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:39:00 2005
         (450 letters)



>mm_chr6_30797287_30798136
          Length = 850

 Score =  824 bits (426), Expect = 0.0
 Identities = 444/450 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggtgtacatctttacatggaatatgactgaagcagctattttggaaaaccagagtctggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 ggtgtacatctttacatggaatatgactgaagcagctattttggaaaactagagtctggt 260

                                                                       
Query: 61  gtaatctataaaatgcagaggtatatatggtaaccctatacttctatatatactgtaaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtaatctataaaatgcagaggtatatatggtaaccctatacttctatatatactgtaaag 320

                                                                       
Query: 121 aagtatatgcttaaacattaaaaatagggatggagactgctgtggtttgaatgtgttcct 180
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagtatatgcttaaatattaaaaatagggatggagactgctgtggtttgaatgtgttcct 380

                                                                       
Query: 181 cagaagtgcatgcatcaaaaacttgaccctcaaatccatatgctaatgctatttatagag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagaagtgcatgcatcaaaaacttgaccctcaaatccatatgctaatgctatttatagag 440

                                                                       
Query: 241 aagcctttgggggttaattcggattagatggcaccatgggggttgggccacttaacaaca 300
           ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 441 aagcctttgggggctaattcggattagatggcatcatgggggttgggccacttaacaaca 500

                                                                       
Query: 301 tgaggaacgctataatagaagacacctcaagtaacacccttgctgtctcgccaggtgaga 360
           ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 501 tgaggaacgctataagagaagacacctcaagtaacacccttgctgtctcaccaggtgaga 560

                                                                       
Query: 361 caaccaggttttccagatgctgagcaaatgccagaagcatgctcttgccttcccaacctc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caaccaggttttccagatgctgagcaaatgccagaagcatgctcttgccttcccaacctc 620

                                         
Query: 421 taaaattgagccaaatccaacatttcttag 450
           ||||||||||||||||||||||||||||||
Sbjct: 621 taaaattgagccaaatccaacatttcttag 650


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 850
Length adjustment: 10
Effective length of query: 440
Effective length of database: 840
Effective search space:   369600
Effective search space used:   369600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no126_i23.g1 MSMg01no126_i23.g1 CHROMAT_FILE:
MSMg01no126_i23.g1 PHD_FILE: MSMg01no126_i23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:39:00 2005
         (456 letters)



>mm_chr6_30872877_30873732
          Length = 856

 Score =  828 bits (428), Expect = 0.0
 Identities = 449/456 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagagccatgaataacaatttttcttagatggaaaaacactgagttgagagacatatttc 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 aagagccatgaataccaatttttcttagatggaaaaacactgagttgagagacatatttc 597

                                                                       
Query: 61  aatgaaatgagtatttaaaaatcaaaggaatacagtggtgagcatgatagtctgaaggaa 120
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 596 aatgaaatgagtatttaaaaatcaaaggaatacagtggtgagcatggtagtctgaaggaa 537

                                                                       
Query: 121 atatccgtgtatttagtaatgatttaaagttttcaacatgcaaattttcaaagctcattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 atatccgtgtatttagtaatgatttaaagttttcaacatgcaaattttcaaagctcattt 477

                                                                       
Query: 181 caggtggcaaaagagggagactggatctgtttgtccataatgcactagacccattctatt 240
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 476 caggtggcaaaagagggagactggatctgtttgtccataatgccctagacccattctatt 417

                                                                       
Query: 241 gtgtggctttctggccccacagtggatctcatttccttagggtcctgttctcgaacattt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 gtgtggctttctggccccacagtggatctcatttccttagggtcctgttctcgaacattt 357

                                                                       
Query: 301 acctggacagattctttgggacatgtgttaaacctgcttccccatctgcaaaaaccatgc 360
           ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct: 356 acctggacagattctttgggacatgtgttaaccctgcttccgcatctgcaaaaaccatgc 297

                                                                       
Query: 361 cattttgaatccacaaaaggatgcccaaggtatcttttgatctttgtggtagtcttctta 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 296 cattttgaatccacaaaaggatgcccaaggtatcttttgatctttgtggtagtcttttta 237

                                               
Query: 421 tctaaattttctgcaactgcctggatttcctctgat 456
           ||||||||||||||||||||||||| ||||||||||
Sbjct: 236 tctaaattttctgcaactgcctggagttcctctgat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 856
Length adjustment: 10
Effective length of query: 446
Effective length of database: 846
Effective search space:   377316
Effective search space used:   377316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)