BAC Information

Click to search

BAC

Clone NameMSMg01-126J12
Chromosome6 (Build37)
Map Location 9,691,675 - 9,691,937
singlet/doubletsinglet
Overlap genenone
Upstream geneIca1, LOC100040238, Nxph1
Downstream geneLOC330264
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-126J12.T7 (MSMg01no126_j12.b1)MSMg01-126J12.TJ (MSMg01no126_j12.g1)
ACCAG335368AG335369
length702703
length of high quality
(start - end)
496 (45 - 540)260 (71 - 330)
definitionCHROMAT_FILE: MSMg01no126_j12.b1 PHD_FILE: MSMg01no126_j12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:39:02 2005CHROMAT_FILE: MSMg01no126_j12.g1 PHD_FILE: MSMg01no126_j12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:39:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATGCGCGGAA
TTCATTGGTATACAAGAAAACTTCATGAAAAGAACATCAATAACTCAGGC
ATTAAAATCAACTACAAAATTGGACCTTATGAAACTGAAGACTTTCTTTA
AGGCAAAGGACACTGTTAATAAGACAATATGGCAGCCCTCAAAATGGAAA
AAGAGAATTCTCAACATAGAATTCTTGAATGGCCTAGAAGCACTTAAAGA
AATGTTCAATGCTTTAGTCATAGAGTAAATGCAAATCAAAAGGATTCTGA
GATTCAACCATACAGCCATCAGAATGGCTAAGATCAAAACCTCAAGCAAC
AGCACAATTTAGGGAGGATGTTGAACATAGGGAACACTCCTCCATTACTT
GAGGGAGTGTATACTTGTTCAAGCCCTCTGGAAATCAATTTGTTGGTTTC
TCAGGAAATTAGGAGTTGTTCCACCTCAACAACCAGCTTTACCCCTGCTG
GGCATATACCTAAATTGATGCTCTACCATATCACAAATCCATTTGTTCAA
CAATGTCCATAGCAGCTTCATTCATAAAAGCCCAAAACTGGAAACAACCC
ATATGTCTCTCCACCTGAAATATGGATAAAGAAAATGCTGTTCATTTGCA
CCATAGAATTCTACTCCTCTATGAAAAATAAGACATCAAGAAATTTGCAG
AC
ATGAAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCTTTGTTCTTGGGAGATGTAAATGAAACA
GACCTACCTGATATTCAAGAGAAATTCTTGTTTAGGTCCTACAATGTTTG
AAATATCATTGTATTTTATTCAATTTTTTTTTATACAATGACTTTTGTTG
AGATTTTTGTCAGATGAAGGTATTAGGTATTAGTGGTGTATTCTGGTTCT
CTAGGAAGATTGTAAGGTTAAAAAAAAGCTATTGAAACAAATCTAAACAT
TGTCTTCTATGATTTATAAACATAATTAAGTAAAAGAAAATTAATATTGT
AGCTTTTAGCAATTTGTATGGTAGTGAAATGGGTTTATTTTTCATTACCA
AATAATACATAGGTTTTCTACTTGATTTACACTGCGTGGCATATATATTT
TAAGATAAACTAAACTAATCTTTCACTATTCACTATGAGAAATTACTAAA
ATTTAATTTTCTTGACACCTTGTCTCCTAACTGCTGGACTTGAATGTATG
TAATATCCTTGTCTCAATTTGTTTACCAGGCGTCTGTCAAATTTACCGTC
ATCTGTTAATTTATAATTTGAGTTGCTGCAATCGTGATTTTTCCACTTGT
TTTCCGTTTTGACGATAATATATCTTCCACTTATATTTTATGACTTCCTG
TTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no126_j12.g1 MSMg01no126_j12.g1 CHROMAT_FILE:
MSMg01no126_j12.g1 PHD_FILE: MSMg01no126_j12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:39:02 2005
         (260 letters)



>mm_chr6_9691475_9692137
          Length = 663

 Score =  466 bits (241), Expect = e-136
 Identities = 257/263 (97%), Gaps = 3/263 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctttgttcttgggagatgtaaatgaaacagacctacctgatattcaagagaaattcttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 tctttgttcttgggagatgtaaatgaaacagacctacctgatattcaagagaaattcttg 404

                                                                       
Query: 61  tttaggtcctacaatgtttgaaatatcattgtattttattcaa-tttttttttatacaat 119
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 403 tttaggtcctacaatgtttgaaatatcattgtattttattcaattttttttttatacaat 344

                                                                       
Query: 120 gacttttgttgagatttttgtcagatgaaggtattaggtattagtggtgtattctggttc 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 gacttttgttgagatttttgtcagatgaaggtattaggtattagtggtgtattctggttc 284

                                                                       
Query: 180 tctaggaagattgtaaggtt--aaaaaaaagctattgaaacaaatctaaacattgtcttc 237
           ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||
Sbjct: 283 tctaggaagattgtaaggttaaaaaaaaaagctattgaaacaaatctaaacattgtcttc 224

                                  
Query: 238 tatgatttataaacataattaag 260
           |||||  || |||||||||||||
Sbjct: 223 tatgaagtagaaacataattaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 260
Length of database: 663
Length adjustment: 9
Effective length of query: 251
Effective length of database: 654
Effective search space:   164154
Effective search space used:   164154
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)