BAC Information

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BAC

Clone NameMSMg01-126N20
Chromosome6 (Build37)
Map Location 19,443,408 - 19,443,910
singlet/doubletsinglet
Overlap genenone
Upstream geneCttnbp2, EG545829, Lsm8, Ankrd7, LOC626180, Eif3s6-ps4
Downstream geneLOC100040838
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-126N20.T7 (MSMg01no126_n20.b1)MSMg01-126N20.TJ (MSMg01no126_n20.g1)
ACCAG335562AG335563
length692718
length of high quality
(start - end)
503 (75 - 577)315 (65 - 379)
definitionCHROMAT_FILE: MSMg01no126_n20.b1 PHD_FILE: MSMg01no126_n20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:39:24 2005CHROMAT_FILE: MSMg01no126_n20.g1 PHD_FILE: MSMg01no126_n20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:39:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGAA
TTCTTTCTCCCCTCCCAAAAAGTGTGCCACCATTATCTAGAAATTGATTT
TATTTTACCCTACTCAGTCCCTTTCTTTATAGTATTATGGTTATATATTA
TCTCTGAAGAAACTCGAAGTATTTAAAATTGAAGAAAATGAAATAGTGGA
ATTACCTATGTTGTTAAAAAAGTAGTTTATTACAACATATCAAGTTTCAT
TTTTATATATTATAACTGAGCCTTCTAATTAGACAGTTTTGATTATTTTT
TCCTCAAATGGTAAATCATTAATTGTGACTATTAATAGATCTCCTGAAAT
GTAAGAGACATAAATGAGAATGGCAAGCTACAAGCAAACATTATATTCAG
TAACATCTAAGAGAATTATTTTTTAATTTTATATTATCTTTATTTACATT
TCAAATTTTATTGATTTTCCTCATTTCCCCCTCTGAAAACTACCCTATAC
TGTCCCTCCTTCTCCTGCTCAGTAACAGAACCACTCCTGCTTCCCTGTCC
TGAAATTCCCCTACCCTGGGGTATCGAGCCTCCACAAGACTAAGACCTCT
CTTCTCATTGATGTCCCACAAGGCCATCTTCTGCTACATATGTGGCGGAA
GCCTTGAGTCCCTCCTTGTGTACCCTTTGGTTGAAGGTTAAC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTCCTCTGAAGAAAAGACTTGGAGGAGGAAGCAGCTC
ATTATGAGAGAAAAGGGTACCAGCCAGATAAAATGCTAGCTAATCAGTTA
AGGAAAAAGCCAAAAGCGGCTGGCGAAGGCCAGCATGCTGTTCAGCCTCC
AGGCAGTTGGCTTCAAGGTCATAGTGCACCTCCACCCTATGCGGAGTCCC
CGCCCTGCGTAAGGCGTCAGCCCTTCGCAGAGAGGCAATGGACAGAGAGG
CAATGCGCGGACTCATTCATTCCTAGAGAGGAACAAATGAAAATGCAACA
GGCATTTCCGGTCTTTGAAGGAGCTGAGCAGTGGCGGCACACGCCTTTAA
TCCCAGCACTTGGGAGACAGAGGCAGGCTCTTGCTGCCTACAAGGTCTTA
TTGTCCACCCTGGAGTTGTAGATCAGGATTATAAAGGGGAACTTCAGGTT
CTCTGCTCTTGTCCTCAAGTCGTCTTTTCTATATCACAAGGGGACAGAAT
AGCTCAACTAACATTTTTGCCAAGCCTACATGCCTGTTTTTCCTTCCTCT
GGTATTCCTTGAACTGTCAGAGGGATTGGTTCAACTAGAAATGACACTGA
TTACCCACAAATGCCCGCATATTGGCGCCAAAATTTATCTACCCATGTAG
GGGAAAAACCTCCTGATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no126_n20.b1 MSMg01no126_n20.b1 CHROMAT_FILE:
MSMg01no126_n20.b1 PHD_FILE: MSMg01no126_n20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:39:24 2005
         (503 letters)



>mm_chr6_19443208_19444110
          Length = 903

 Score =  949 bits (491), Expect = 0.0
 Identities = 500/503 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgccaccattatctagaaattgattttattttaccctactcagtccctttctttatagta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgccaccattatctagaaattgattttattttaccctactcagtccctttctttatagta 260

                                                                       
Query: 61  ttatggttatatattatctctgaagaaactcgaagtatttaaaattgaagaaaatgaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttatggttatatattatctctgaagaaactcgaagtatttaaaattgaagaaaatgaaat 320

                                                                       
Query: 121 agtggaattacctatgttgttaaaaaagtagtttattacaacatatcaagtttcattttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtggaattacctatgttgttaaaaaagtagtttattacaacatatcaagtttcattttt 380

                                                                       
Query: 181 atatattataactgagccttctaattagacagttttgattattttttcctcaaatggtaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atatattataactgagccttctaattagacagttttgattattttttcctcaaatggtaa 440

                                                                       
Query: 241 atcattaattgtgactattaatagatctcctgaaatgtaagagacataaatgagaatggc 300
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atcattaattgtgactatgaatagatctcctgaaatgtaagagacataaatgagaatggc 500

                                                                       
Query: 301 aagctacaagcaaacattatattcagtaacatctaagagaattattttttaattttatat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagctacaagcaaacattatattcagtaacatctaagagaattattttttaattttatat 560

                                                                       
Query: 361 tatctttatttacatttcaaattttattgattttcctcatttccccctctgaaaactacc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tatctttatttacatttcaaattttattgattttcctcatttccccctctgaaaactacc 620

                                                                       
Query: 421 ctatactgtccctccttctcctgctcagtaacagaaccactcctgcttccctgtcctgaa 480
           |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct: 621 ctatactgtccctccttctcatgctcagtaacagaaccactcctgattccctgtcctgaa 680

                                  
Query: 481 attcccctaccctggggtatcga 503
           |||||||||||||||||||||||
Sbjct: 681 attcccctaccctggggtatcga 703


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space:   440249
Effective search space used:   440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)