BAC Information

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BAC

Clone NameMSMg01-126O13
Chromosome6 (Build37)
Map Location 63,734,811 - 63,735,177
singlet/doubletsinglet
Overlap geneGrid2
Upstream geneGA_x5J8B7W6GG0-4757855-4757501, LOC667099
Downstream geneAtoh1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-126O13.T7 (MSMg01no126_o13.b1)MSMg01-126O13.TJ (MSMg01no126_o13.g1)
ACCAG335595AG335596
length707705
length of high quality
(start - end)
370 (44 - 413)458 (62 - 519)
definitionCHROMAT_FILE: MSMg01no126_o13.b1 PHD_FILE: MSMg01no126_o13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:39:28 2005CHROMAT_FILE: MSMg01no126_o13.g1 PHD_FILE: MSMg01no126_o13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:39:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGCGGAAT
TCTTTAGCTGTCCGCAACAGTGTATTGAACATGTAAACATGTATGTACAA
ACACCGTTTTTTAGAATAAATCCTAAGAATAAGCCTTTATGTATATATCT
TAAATTGTCCTTCAGAAGATTCTATAAACTTACAGTGAATAAAACTTTTG
ATTGTAGAATCTAAGCGATTTTTAGTTATTTTTCACCCACCTAAAGGTTC
ACTGTTTCTATTGGAATGCCAAAACTGTTTTGTCTTGATTGACTGTTTAA
ATGTTCAATATCCTTTTTACTTATTATTAAAAGACAATCACTGGAATATT
TCTGTCCGAGTAAAGAAACTGAATAACAATTAAATACTACATTAAATTAA
AATGAAACATACAAATTATAGAATACTGGTACAATAGAATATCATAAGCC
AGTGACAGTGAATCATGGCTGCCTGAATGTCAATGAAGAGGAATTTCAGA
GTCACATAATGAAATGAACAATACTGACCCTGAAGGACTGGAATTATGAT
TATGTCCAAAATTTAAATCTCTGTTTGTGTTTATCCTCATTACGAGATTG
GATAATAAGACACACAGCATTTGCGATTGGATTTTGGAGTCTTCCGCTCT
TGTACTATGTCAGTCTTTTAATGAAACATTCATTTTATCACATATCCTTG
AGCTTTA
AAAATGGGTAGGCTGGCGGACGCCTGTTCGACAAAAGGGGGTGACCTATA
GAAGTTCCCCGGAATTCAAGAAACTAGGTATCAACAAAACAAATAATCCA
ATTAAAAATGGAGTACAAATATAAACAGTGAATTCTCCAGAGAGGAATCT
TAAATGGCAGAGAAGCACTTAAAGACATGTTTAACATTCTTATCCATCAG
GGAAATGCAAATCCAAATGATGTTGAGATTCCATCTTACATCTGTAAGTA
TGGCTAAGATTAAAAAAAAAAAAAGGTGACAGCTCACGCTGCCAAAGATA
TGGAGCAAGCAGAACACTCCTTTATGGTGGTGAGAGGGCAAGCTTATCTA
GCCTCTTTAGAATATTGGTGGCTTCTCTGAAAATCGGTAATCAATATACC
TTAACATCCAGCTTCCCTACTCACGGTCATATACCCAAAGGATGGTCCAT
TCTTCCATAAGGACATTTGCTCAACTATGTTTAGAGCAGCTTTATTCATA
ATAGACAAAATCTGGAAACAACCTAGTTGCCCTTCACTTGAAGACTAGAG
AAAGAAAACATGGTAAACTTATCAACTTTCTTCCTTCCTTCCTTCCTTCC
TTCCTTCCTTCCTTACTTTACTTTCTCCTTCTTTCATTCCTTCCTTCCCT
CTTCCTTCCCTCTTTTCCTTCTCTTCCTTTCCTCCTTTCTTTTTTCCTTT
TTACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no126_o13.b1 MSMg01no126_o13.b1 CHROMAT_FILE:
MSMg01no126_o13.b1 PHD_FILE: MSMg01no126_o13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:39:28 2005
         (370 letters)



>mm_chr6_63734608_63735377
          Length = 770

 Score =  640 bits (331), Expect = 0.0
 Identities = 358/367 (97%)
 Strand = Plus / Plus

                                                                       
Query: 4   gaattctttagctgtccgcaacagtgtattgaacatgtaaacatgtatgtacaaacaccg 63
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattctttagctgtgagcaacagtgtattgaacatgtaaacatgtatgtacaaacaccg 263

                                                                       
Query: 64  ttttttagaataaatcctaagaataagcctttatgtatatatcttaaattgtccttcaga 123
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct: 264 ttttttagaataaatcctaagaataagcctttatgtatataacttaaattgtccttcgga 323

                                                                       
Query: 124 agattctataaacttacagtgaataaaacttttgattgtagaatctaagcgatttttagt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agattctataaacttacagtgaataaaacttttgattgtagaatctaagcgatttttagt 383

                                                                       
Query: 184 tatttttcacccacctaaaggttcactgtttctattggaatgccaaaactgttttgtctt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tatttttcacccacctaaaggttcactgtttctattggaatgccaaaactgttttgtctt 443

                                                                       
Query: 244 gattgactgtttaaatgttcaatatcctttttacttattattaaaagacaatcactggaa 303
           |||||||| ||||||||||||||||||||||||| ||  |||||||||||||||||||||
Sbjct: 444 gattgactatttaaatgttcaatatcctttttacataaaattaaaagacaatcactggaa 503

                                                                       
Query: 304 tatttctgtccgagtaaagaaactgaataacaattaaatactacattaaattaaaatgaa 363
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tatttctgtcagagtaaagaaactgaataacaattaaatactacattaaattaaaatgaa 563

                  
Query: 364 acataca 370
           |||||||
Sbjct: 564 acataca 570


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 770
Length adjustment: 9
Effective length of query: 361
Effective length of database: 761
Effective search space:   274721
Effective search space used:   274721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)