Query= MSMg01no128_c20.b1 MSMg01no128_c20.b1 CHROMAT_FILE:
MSMg01no128_c20.b1 PHD_FILE: MSMg01no128_c20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:41:11 2005
(323 letters)
>mm_chr6_132677844_132678567
Length = 724
Score = 565 bits (292), Expect = e-165
Identities = 313/320 (97%), Gaps = 1/320 (0%)
Strand = Plus / Plus
Query: 5 gaattcaactctattccctttttctctttctctttagaaaagaaacaggccaataagcaa 64
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaactctataccatttttctctttctctttagaaaagaaacaggccaataagcaa 264
Query: 65 acagaaataatctacactaaagcaaagtacataaagaatcagagaaacaatg-aaaaaaa 123
|||||||||| ||| | ||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 265 acagaaataaactagaataaagcaaagtacataaagaatcagagaaacaatgaaaaaaaa 324
Query: 124 catgagaattacatacacaaatatacacacatgtgaatatgtgcatgtttataaatgtat 183
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 catgagaattacacacacaaatatacacacatgtgaatatgtgcatgtttataaatgtat 384
Query: 184 gatcacgcgtgcgcacatccccacctccaccatagaaaccttagtagagaagtaaaagag 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gatcacgcgtgcgcacatccccacctccaccatagaaaccttagtagagaagtaaaagag 444
Query: 244 aagtaaagacagtccaaacaaagctttactaaacaaactatttctagaaatgccactgag 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aagtaaagacagtccaaacaaagctttactaaacaaactatttctagaaatgccactgag 504
Query: 304 tttgttttatgctagtcatc 323
||||||||||||||||||||
Sbjct: 505 tttgttttatgctagtcatc 524
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 724
Length adjustment: 9
Effective length of query: 314
Effective length of database: 715
Effective search space: 224510
Effective search space used: 224510
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no128_c20.g1 MSMg01no128_c20.g1 CHROMAT_FILE:
MSMg01no128_c20.g1 PHD_FILE: MSMg01no128_c20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:41:11 2005
(568 letters)
>mm_chr6_132898438_132899407
Length = 970
Score = 978 bits (506), Expect = 0.0
Identities = 554/570 (97%), Gaps = 2/570 (0%)
Strand = Plus / Plus
Query: 1 aattcattagaatcatgaaaaaggccagggtatcaat-aaaaaatgtaaagaactctaaa 59
||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct: 201 aattcattagaatcatgaaaaaggccagggtatcaataaaaaaatgtaaagaagtctaaa 260
Query: 60 gcttgcaaaatatacttacagaaacattgtctctaaaacaggtaaagtcactgcccctct 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcttgcaaaatatacttacagaaacattgtctctaaaacaggtaaagtcactgcccctct 320
Query: 120 ctttggtactcacttcatattttagtttacaaatgaaatatgttagaattgtccttggta 179
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 321 ctttggtactcacttcatattttagtttacaaatgaagtatgttagaattgtccttggta 380
Query: 180 ctatttcacttgtctggaaagatggtctttccccaggggaaatctatgatattttcatcc 239
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctattacacttgtctggaaagatggtctttccccaggggaaatctatgatattttcatcc 440
Query: 240 ataatgaatagtatagttctatgactaagcaaagagctccatggtgaaaacagacctccc 299
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ataatgaaaagtatagttctatgactaagcaaagagctccatggtgaaaacagacctccc 500
Query: 300 ttacagaaaacaaaattttgttttctaataacttgttctgtatgacccacaaaatgatct 359
||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||
Sbjct: 501 ttacagaaaacaaaattttattttctaataactttttctgtatgatgtacaaaatgatct 560
Query: 360 actacagacatattttgagttttggatgtgtgaatttattaagcatatcaaagtaaaaga 419
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 561 actacagacatattttgagttttggatgtgtgaatttattaaacatatcaaagtaaaaga 620
Query: 420 acaaataagaaaaaataaatagac-aaaaatagcacaatcgcaccacatccaatactgaa 478
|||||||||||||||||||||||| |||||||||||||| |||||| |||||||||||||
Sbjct: 621 acaaataagaaaaaataaatagacgaaaaatagcacaatagcaccatatccaatactgaa 680
Query: 479 aatatccattagaaattaactagaagagacccttcaagatattcaaatggaatttccatt 538
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 681 aatatccattagaaattaactaggagagacccttcaagatattcaaatggaatttccatt 740
Query: 539 agatagttttaggtgatgcagaatgttcac 568
||||||||||||| ||||||||||||||||
Sbjct: 741 agatagttttaggcgatgcagaatgttcac 770
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 970
Length adjustment: 10
Effective length of query: 558
Effective length of database: 960
Effective search space: 535680
Effective search space used: 535680
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
