BAC Information

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BAC

Clone NameMSMg01-128I01
Chromosome6 (Build37)
Map Location 97,413,845 - 97,589,282
singlet/doubletdoublet
Overlap geneFrmd4b
Upstream geneC630007B19Rik, C130034I18Rik, A130022J15Rik, Tmf1, Ube1c, Arl6ip5, Lmod3
Downstream geneLOC641241, LOC100043692, Mitf, Gm765, LOC666019, LOC665963
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-128I01.T7 (MSMg01no128_i01.b1)MSMg01-128I01.TJ (MSMg01no128_i01.g1)
ACCAG336755AG336756
length717715
length of high quality
(start - end)
214 (125 - 338)168 (73 - 240)
definitionCHROMAT_FILE: MSMg01no128_i01.b1 PHD_FILE: MSMg01no128_i01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:37 2005CHROMAT_FILE: MSMg01no128_i01.g1 PHD_FILE: MSMg01no128_i01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:37 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,589,069 - 97,589,282)(97,413,845 - 97,414,012)
sequence
TCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTAATATGTTCCCCTTCCTTTGGGACGGTGCAGATATATCTCTTTGT
ATGTTGCCTGGGATAGAGTACATAGTCAGGAATCAGGCAATGTAATGTGT
GCTAATACGACTCCTGATTACTCAGTAGGATCATTTTATGGAGACTGGTT
GACACTGGAGTCCCAAACATGGCTATCTTCTATGCCTTATTGTGCCCGCT
CACAGATCCTTATGAAAGGAGTTTTATAGCACAAGCCTGCCAGTCTCCCC
GGAGATGCCACTTCCCAGGAAACCGCCTTCCCAGAGCATGTTAGCAGCAC
CTGCTGCTCCTCCTTGCAGACCCAGAGTGTCTGTAAAACGTATGGTAAAA
ATAATCACAACAGATCATAGTGAAGAATTGCTTATCTTTGCTCATCTTGG
TTCAGTGTCCTGTCTGATCATGATGCTAGAACTAAATAACCAGATTGAGT
GCCTTACACGCTTACAGTTGTGAATGCTGTTAAGTCCCCGTTTTTGTCTA
ACGAGAGCTGCCCAGGATATCTTTTTCACTAATAATACCTTCTCATCATC
CTCTTGATAATTCTATGCCCTATACAACTCAGTTCATTTTGATTCATTTT
TTCCCCCTTTTATCCAACCTTCTATTACTTTTCTCCCCTGTTGTTCCCCC
ATTTTCTGTTCTTCCCT
CGATGAAGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATAAGTTCCTAAAACTGGGTCTGATAAC
ACTGAAAGTTTATTTAAGGCCTCCCTGAGATCACATGCTACAGCTGTTGG
ACTGGACAGTACGCCGTGTCCAGGAAAAACAGGTCCGATGGAAAAATCTG
TTACTCATGTTCGCCTCCAGGCAGAAAAAGAGGGAACTTTCTTGCACAGG
GCGGGTTCTTGCTTTCTTAACCACAAATGGAAAAGCTTAGGTGAAAAGCT
GTGGGGGAGAGCTGCAGGCATCCGGGCTTCTCAGGACTGTCTTACAGCAA
GAGGCCAAAGGCACGTGCGGTACTGGACACCAACTGTAAAATCTAATAAC
TTCCTCATGTTTGGAAACATAAATACTACGAGGCCTTTGAACATCGTGTT
TGAAGCCCACTTCACACACAGGGACAGAGACCCAGAGTACTCTGTGCTTT
CAGCCTTTCTTTTGGCGTTAAGATATCGGACTCTGTTTCCACTTGTTTGG
TACCCCTATCAGGTCTTTTCACTCACTTCGCTCATACCTTGCGTACAAAG
TGTCATGACCTTCCTTGCCACCTTTATTCTTTCTTCCTTCTTGCCTTTCT
GCATAATTTGATTTTTTTTTTGGTTTGTTTTCGGTCCCCCCTCTCCCTGC
CTTTTTTGTTTCGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no128_i01.b1 MSMg01no128_i01.b1 CHROMAT_FILE:
MSMg01no128_i01.b1 PHD_FILE: MSMg01no128_i01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:41:37 2005
         (214 letters)



>mm_chr6_97588869_97589482
          Length = 614

 Score =  398 bits (206), Expect = e-115
 Identities = 212/214 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtcaggaatcaggcaatgtaatgtgtgctaatacgactcctgattactcagtaggatcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 gtcaggaatcaggcaatgtaatgtgtgctaatacgactcctgattactcagtaggatcat 355

                                                                       
Query: 61  tttatggagactggttgacactggagtcccaaacatggctatcttctatgccttattgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 354 tttatggagactggttgacactggagtcccaaacatggctatcttctatgccttattgtt 295

                                                                       
Query: 121 cccgctcacagatccttatgaaaggagttttatagcacaagcctgccagtctccccggag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 cccgctcacagatccttatgaaaggagttttatagcacaagcctgccagtctccccggag 235

                                             
Query: 181 atgccacttcccaggaaaccgccttcccagagca 214
           |||||||||||||||||||| |||||||||||||
Sbjct: 234 atgccacttcccaggaaaccaccttcccagagca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 214
Length of database: 614
Length adjustment: 9
Effective length of query: 205
Effective length of database: 605
Effective search space:   124025
Effective search space used:   124025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no128_i01.g1 MSMg01no128_i01.g1 CHROMAT_FILE:
MSMg01no128_i01.g1 PHD_FILE: MSMg01no128_i01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:41:37 2005
         (168 letters)



>mm_chr6_97413645_97414212
          Length = 568

 Score =  271 bits (140), Expect = 2e-77
 Identities = 161/168 (95%)
 Strand = Plus / Plus

                                                                       
Query: 1   ataagttcctaaaactgggtctgataacactgaaagtttatttaaggcctccctgagatc 60
           ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||
Sbjct: 201 ataagttcctaaaactggggctgataacactgaaagtttatttaaggtctccctgcgatc 260

                                                                       
Query: 61  acatgctacagctgttggactggacagtacgccgtgtccaggaaaaacaggtccgatgga 120
           |||||||||| | ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 261 acatgctacaaccgttggactggacagtacgccgtgtccaggaaaaacagctccgatgga 320

                                                           
Query: 121 aaaatctgttactcatgttcgcctccaggcagaaaaagagggaacttt 168
           |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 321 aaaatctgttactcatgttctcctccaggcagaaaaagagggaacttt 368


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 168
Length of database: 568
Length adjustment: 8
Effective length of query: 160
Effective length of database: 560
Effective search space:    89600
Effective search space used:    89600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)