BAC Information

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BAC

Clone NameMSMg01-129C11
Chromosome6 (Build37)
Map Location 72,960,045 - 72,960,287
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668057, St3gal5, Atoh8, Sftpb, Usp39, 0610030E20Rik, Tmem150, 2500002L14Rik, Vamp5, Vamp8, Ggcx, Mat2a, Sh2d6, Capg, Rbed1, Retsat, Tgoln1, LOC100038890, Tcf3, Kcmf1, Tmsb10
Downstream geneDnahc6, Suclg1, Olfr210-ps1, 4931417E11Rik, LOC100043338
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-129C11.T7 (MSMg01no129_c11.b1)MSMg01-129C11.TJ (MSMg01no129_c11.g1)
ACCAG337236AG337237
length765796
length of high quality
(start - end)
247 (68 - 314)41 (75 - 115)
definitionCHROMAT_FILE: MSMg01no129_c11.b1 PHD_FILE: MSMg01no129_c11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:42:28 2005CHROMAT_FILE: MSMg01no129_c11.g1 PHD_FILE: MSMg01no129_c11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:42:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAG
GCCGTTCGGAAGATTCCACCACTAGGGGGCAGTCTCCTAGAGCAGCTGTG
GAGCCCATCCGCCCCAAGTTGGGCTCTCCTTCCCAAACCAGCACCAGTCA
GGGCTGACCTCAGCTTTGAGCTACAGGGTTGCAGAACCTGGCAGGACAGT
TACTAACGGCTCTGTGGAATAAAAGGGGGAAAGCAGATGAAAGAAAAGCC
AAGAAGGAAAAAAAAAAAAAACCTCAACCAGGCAAAAAATAAATCAGGAA
GTTCCTCACATGGCTAATAAAGAGAAATGGCCACTTTCTGAATCTGAGAC
ACGCACACATGAATATGCACATTTAATAAAAAATTCAGCCAAAAGAACTT
AGAATTTACTTTTTATTCGTGTGCGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGCGTGCGTGTGTGTGTGTGTGCGTGTGTGCGTGTGTAGCCGTCCGCGC
TTACTCCCCCACATTTTGTTGTAACCCCGTTACCCACACCCCCGCGCTGC
TTTGAATCCTCCCCCCTGTGGGCTTTTGGGACCTAAATCTATTACCCTTC
TGACATTAGCTATCGCCCCTCTTAATCCTTGTGAACTTTCTTTTTAAGTC
CTTGCCTCGCACTTTATCCTTCGCATTACTTTCGCCCTTTGTTTCCTCCA
TTCGCTCTTGACCAATGCTTCTCTTCTCTGTCTTTACCCCCCGTGGACCG
CTCACCCGGTCTCTN
CGATGCAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGTCAGTGCCACAAAGGGAG
ACCTTGCCTAAAGGGAGGTGGCCCCATGAGGGGTGGGATACAGGGAGTAG
GGGTACTTCCTGAGCCATATACCAGATCTATACTAAATCAAATGTTTATA
GTTCACATTTTTAACTATTTTTATTTGCCTTTCCATAGCTTAGGATTAAC
ATTACTACATGTCCTTATTTGTATGTGATATACTTTTTTTATGTTGAAAT
TTCATATAGTTGAACTCATCTGTTCTTTTTGTGCTATATTTTACCGATCT
TAACTCGCCACCTATTTTTTGCTTCCCTCCCGCTCACCTATTCCTCTTAC
CTGTCCCTCTTTATTTTTCCCCCCCCTTTGTTATTTCACCCTGTGCCCTA
CTTTCCCTATTTTTTTTGGACTTTTTTTTATAATTTTTTGCTNCACAACC
CACCCCCCGGCCCCGATGATATGTTTCCCCCTTTTTCCTACCCCCTTTCT
GTTTCTTCTTTTTTATTCCTATCTTCCTTTTTCTATCTTACTTACGCCTT
GTTCCTCCCCCCCCCCCCCGCCTATTTTATCTCGCATGCTCTTATCCCCC
CACGCGCTCTCTATTTACATTTTACTCTTGCCCCTTTATTTCTCTTTTGG
CAACTAATTCGTATTTCCTTATCACTTCAATCCTATCTTCTTATTTCTCC
CCCCACCTTCTCACCTCTATTATTTATCCTCTATACTTTCTACTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no129_c11.b1 MSMg01no129_c11.b1 CHROMAT_FILE:
MSMg01no129_c11.b1 PHD_FILE: MSMg01no129_c11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:42:28 2005
         (247 letters)



>mm_chr6_72959845_72960487
          Length = 643

 Score =  435 bits (225), Expect = e-126
 Identities = 240/247 (97%), Gaps = 4/247 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   accactagggggcagtctcctagagcagctgtggagcccatccgccccaagttgggctct 60
           |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct: 443 accactagggggcagtctcctagagcagctgtagagcccatccgcctcaagttgggctct 384

                                                                       
Query: 61  ccttcccaaaccagcaccagtcagggctgacctcagctttgagctacagggttgcagaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ccttcccaaaccagcaccagtcagggctgacctcagctttgagctacagggttgcagaac 324

                                                                       
Query: 121 ctggcaggacagttactaacggctctgtggaataaaagggggaaagcagatgaaagaaaa 180
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 323 ctggcaggacagttactaacggctctgtggaataaaagggggaaggcagatgaaagaaaa 264

                                                                       
Query: 181 gccaagaaggaaaaaaaaaaaaaacctcaaccaggcaaaaaataaatcaggaagttcctc 240
           ||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gccaagaagg----aaaaaaaaaacctcaaccaggcaaaaaataaatcaggaagttcctc 208

                  
Query: 241 acatggc 247
           |||||||
Sbjct: 207 acatggc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 643
Length adjustment: 9
Effective length of query: 238
Effective length of database: 634
Effective search space:   150892
Effective search space used:   150892
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)