BAC Information

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BAC

Clone NameMSMg01-129F01
Chromosome6 (Build37)
Map Location 18,815,902 - 18,816,009
singlet/doubletsinglet
Overlap genenone
Upstream geneSt7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8
Downstream geneAnkrd7, LOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-129F01.T7 (MSMg01no129_f01.b1)MSMg01-129F01.TJ (MSMg01no129_f01.g1)
ACCAG337356AG337357
length742745
length of high quality
(start - end)
108 (118 - 225)34 (98 - 131)
definitionCHROMAT_FILE: MSMg01no129_f01.b1 PHD_FILE: MSMg01no129_f01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:42:40 2005CHROMAT_FILE: MSMg01no129_f01.g1 PHD_FILE: MSMg01no129_f01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:42:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTGCGGCGCTATACGACTCACATACCGAGAGGATCCGCGGAATTCAGTCT
TGTTCCCAAAACACCGAGCATACAGGGAAAGGTGGACAAGGTCAGGGAAA
TGTAATATTGTTTCTGAGCCTTAGCTACATTGAGCTCAGTCGTCAACGGA
CTTTTAATTTTTTAAGTAGACAAGTTAAGGTGGAACATGAGGGGCATGTT
TACAAAGTGCGCTTAAAATTGAGATCATCCAGAGATGATAGGTATAACAA
GCTATAGCACGTGACCGTGCAAGCACAGACAACACCACGCCCAGAAATCC
ATCTTCTTCAACCCCCCTTGCATTGGCTCAATTAACAAGCGATTTCATCC
TTTTTTTTTCCCCCACCCCCCCCCCCCCATTATCCTTCCACCCTTTGCTT
CTGATTTACCATCAAAAAAGAAAAAAGCGCCCCTCGTGAGGGGCCCCGCT
CTTCCATCATTATCCTCTTCCGCTTACTGGTTCCCTTCTCTCGCCTGCCA
TTGTTTCCTCAATCCCTCTGCACTAGCCTCCTGCCCACATAACATACACC
CCTCCGTGCCTATACCTACTCTCCCCGTCCTCAACCCCTAGACATCTCTC
CCACTCTCAGTATTTGTTCCTCCCCCCCCCCTCCCTCTTCGACAACACTC
AGCTCTTCCACCTTCTCCACCCCCTCCTCCTCCTTCTCTCTCTCCCCTGT
TATTATCCCCATATTGTCTTTCCCCCACTCGTCCCCCCCCCC
GCTGTGTTAGGCCTGGTGGCGTCTGTTCCCAACTTTAGGTGACCTATAGA
AGTTCCCCGAATTCTTTGTTTAGCTCTGAGCCCCATTTTTACCGGGGTTA
TTTGAATTTCTGCCCCCCACCTTCTTGAGCTCTTTGTATATAATGAATAT
TATTCCCCTATTTTAATTACGTATTGCTAAAGATTCTTTCTCTAATCTGC
TGGTGCCCTTTTTGTCCTCATTGATGGCGCCCTTTGCCTTATACAATCTT
TCAACATTTTACGACGTCCTACTTGTTGATTCTTGATCTTACACCACACA
CCTTTGCTGTTCTGTTCTGCACTCTTTCCACTGTGCCCAATTTTTTTAGG
CTTTTCTCTTCTTCCTCCCCTCCAATTCTTACTGCCTCCGGTTTCATGCG
GAGTCTCCCCGATCCCCCTTAAACAATACCACCAGCCCACCGCGCCACCC
TCGCTCCCATCTTGCTCTCTCCCTTTCTGACATTTTTTTTCCACCTCCCG
CTTTTTAGTGTTTACCCCCTACCCTGTCCATCCTGTCTTTTTTTCTCCTG
CTCTATTACCTTTACTAACTCCCTATCCAGTATAAATCCCATTACTCTTC
ATTATTTCTTTACCTCTCACCCTTTTCTTCAGTATCTTTTCTCTCTCTTT
ATTCCCAATATCTGTACACTCCTCTTCCTTATTTAATTTTCTTTCTTACC
TACCTTCTATTCCTTCTTCTCCCTATTTCTTTATTCTTTCTCTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no129_f01.b1 MSMg01no129_f01.b1 CHROMAT_FILE:
MSMg01no129_f01.b1 PHD_FILE: MSMg01no129_f01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:42:40 2005
         (108 letters)



>mm_chr6_18815702_18816209
          Length = 508

 Score =  194 bits (100), Expect = 2e-54
 Identities = 106/108 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gccttagctacattgagctcagtcgtcaacggacttttaattttttaagtagacaagtta 60
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gccttagatacattgagctcagtcgtcaacggacttttaattttttaagtagacaagtta 260

                                                           
Query: 61  aggtggaacatgaggggcatgtttacaaagtgcgcttaaaattgagat 108
           |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 261 aggtggaacatgaggggcatgtttacaaagtgtgcttaaaattgagat 308


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 108
Length of database: 508
Length adjustment: 8
Effective length of query: 100
Effective length of database: 500
Effective search space:    50000
Effective search space used:    50000
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)