BAC Information

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BAC

Clone NameMSMg01-129H22
Chromosome6 (Build37)
Map Location 65,772,839 - 65,773,132
singlet/doubletsinglet
Overlap genePrdm5
Upstream geneLOC100041833, LOC667115, Smarcad1, Ptgds2, LOC100042741, LOC100041858, LOC634745, EG667141, C130060K24Rik, 9030611K07Rik, A930038C07Rik, LOC667160
Downstream gene4930544G11Rik, Ppia-ps6_651.1, LOC100041916, Tpm3-rs3, LOC627751, Mad2l1, V1rc15, LOC100041941, Aurkb-ps, V1rc14, LOC546901, V1rc12, LOC627833, V1rc11, V1rc10, LOC100042816, LOC546902, V1rc13, EG546903
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-129H22.T7 (MSMg01no129_h22.b1)MSMg01-129H22.TJ (MSMg01no129_h22.g1)
ACCAG337489AG337490
length716731
length of high quality
(start - end)
573 (36 - 608)296 (75 - 370)
definitionCHROMAT_FILE: MSMg01no129_h22.b1 PHD_FILE: MSMg01no129_h22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:42:55 2005CHROMAT_FILE: MSMg01no129_h22.g1 PHD_FILE: MSMg01no129_h22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:42:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCTGA
TTCACTTCCCTCCTTCTTTAATTAGTTATTTCAGTTGTTGTTGTCTAACT
TCTTGAGTTCTTTCTACATTTTGCATGTTAGCGCCCTATTGGCTATAGGG
TTTTTTCTTCTTTTTTCTTTTCCCAGTCTGTAGGTTGCCATTTTGTCCTA
TTGACAGTGTCCTTTGCCTTACAGAAGCTTTCCAGTTTCATGAGGTCCCA
TTTATCAATTGTTGATCTTAAAGCTCAAGCCATTGGTGTTCTGTTTAGGA
AAATTTTCCCTGTGCATTCATGGCTATTTCCCACTTTTCTTCTATTAAAT
TCAGTGTATCTGGTTTAATGTTGAGGTCTTTGATTCTCTTAGACTTGAGC
TTTGTGCTCCCTCCCTCTTTCCTTCCCTCTCTTTTTTCTCTCTTCTTCTC
CTTCCCTCCTTTCCTTTAACCCTCTTTCTTCCCTTCTCCCCCCTCTCCCT
CTCCTTTTATCCTTCTCCCCCTCACTCCACCTTTTCATAAACTGCCTAAA
ATTAGTTTCCATTCAAACCATCATGATTTGAAAATAAGTAAATATGTAGT
TCTTTTATTTAATTGTCTCGGTATAATCTCTCCAACTGTGAAAACGTGAT
ATCACAGGATAATGTAAGCAGTTTTCAGGGTGAACCTTACAAAGCCCCAA
GGTATACATAACTAAC
TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTAAAACTTAAAACTTATGTAGAAAA
GGGATTCCTTCCAGGGTCCTGTTATGCTCCAAAAAAAAAAAAAAAAAAAA
AAAAAATAGATAAACTTCTCTCAGAGGTGACTGGGAAGGGGGAACCAGGC
AGGCAGGGCACCATTTGGGAATGTAAATAAAATAATTAATTCAAATAAAT
AAATAGTGAATAGACAAAAAAACCAGACTCATTAAGGGTATTTTGTTAGT
TTGTGTTTTAAACTGTAGAATTCTCACTTCCTCTTAAGGAGTGAAGTTAG
AGTAGAAACAGTGCTGAGGCAATTGTTTCCCCCGCCGCCTTGACAAATGT
CACTAAGGGAGCTAAGAATTGAAACATGCCTCTAGCCAGAAATCAGGAAT
GAAATGAGAACCATACCCTTAAGAGTCTATGGCAGTAATCTTCAACCTTT
CTAATGCTGCAACCCTCTAATACAGTTCCTAATGTAATGTTGTTATATTA
GTATGTGACCCCAACCATAGAATTATTTTTGTTTCTACTTCATAACTATA
ATTTTACTACTGTTATGAATTGTAACCTATTATCTGCTTTCCAATTGTCT
TAGGTGTGAAAGGTTTGTGGCCCCTCCAGGCTGATTACTATTTGATTAGG
AGAACAAAATGTCGTCATACTGAAAAAGCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no129_h22.g1 MSMg01no129_h22.g1 CHROMAT_FILE:
MSMg01no129_h22.g1 PHD_FILE: MSMg01no129_h22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:42:55 2005
         (296 letters)



>mm_chr6_65772458_65773152
          Length = 695

 Score =  453 bits (234), Expect = e-132
 Identities = 282/302 (93%), Gaps = 16/302 (5%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctaaaacttaaaacttatgtagaaaagggattccttccagggtcctgttatgctccaaaa 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |  ||||
Sbjct: 675 ctaaaacttaaaacttatgtagaaaagggattccttccagggtcctgttatg-t--aaaa 619

                                                                       
Query: 61  aaaaa---aaaaa-aaaaaaaaaaaatagataaacttctctcagaggtgactgggaaggg 116
           |||||   ||||| ||||||||||||||||||||| ||||||||||||||| ||| ||||
Sbjct: 618 aaaaaaacaaaaacaaaaaaaaaaaatagataaac-tctctcagaggtgac-ggggaggg 561

                                                                       
Query: 117 ggaaccaggcaggcagggcaccatttgggaatgtaaataaaataattaattcaaataaat 176
           ||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 560 ggaaccagg-agggagggcaccatttggg-atgtaaataaaataattaattcaaataaat 503

                                                                       
Query: 177 aaat----agtgaatagacaaaaaaaccagactcattaagggtattttgttagtttgtgt 232
           ||||    |||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct: 502 aaatagagagtgaatagacaaaaaaa-cagactcattaagggtattttgttagtttgttt 444

                                                                       
Query: 233 tttaaactgtagaattctcacttcctcttaaggagtgaagttagagtagaaacagtgctg 292
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 443 tttaaactgtagaattctcacttcctcttaaggagtgaagttagagtagaaatagtgctg 384

             
Query: 293 ag 294
           ||
Sbjct: 383 ag 382


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 695
Length adjustment: 9
Effective length of query: 287
Effective length of database: 686
Effective search space:   196882
Effective search space used:   196882
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)