BAC Information

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BAC

Clone NameMSMg01-129N13
Chromosome6 (Build37)
Map Location 3,446,507 - 3,446,770
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039885, LOC100039896, LOC100040185, EG667335, Samd9l, AI987662
Downstream geneCcdc132, Calcr, LOC100039942, Tfpi2, Gngt1, Gng11, 4930528H21Rik, Bet1, LOC667381, LOC100039965
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-129N13.T7 (MSMg01no129_n13.b1)MSMg01-129N13.TJ (MSMg01no129_n13.g1)
ACCAG337749AG337750
length703713
length of high quality
(start - end)
229 (119 - 347)263 (72 - 334)
definitionCHROMAT_FILE: MSMg01no129_n13.b1 PHD_FILE: MSMg01no129_n13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:24 2005CHROMAT_FILE: MSMg01no129_n13.g1 PHD_FILE: MSMg01no129_n13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTG
TTTATACCTGTTTTTAGTCTGCTACTACTAAGGCCAAGTCCTGTTGATTC
CAACTGATTTTAACCCAACATTACACAGCTCTTCTTACACAGATGCTGTT
GCAGAAGACCTGAAGTAGTAATGAGCTTAATAGTTCAGATGCTTAGTGTC
TGCAGGTCTCCAAACTGCATTTAAAAATACCAACACAACAACAACAACAT
TATTATCATCATTATCATCATCATCATCACCACCACCACCACCATCATCA
TCACCATCCACTAACCAGTCACATCTTAGCCCAAAAGGAAACAACAAACT
ATTCTTGAGTCCTTGAACGTCAGGTTAACATCTAAAAAAGAAGTTTGTCA
ATTATCAGGACAGAGTTCACCAGAATTTCTTTCCTGCATGTTACATCTTT
AGTTACAAAAGTTAAGATTCCTAAACATGGTTCACTTTGGTGTACATTAT
CTGTTATGCTTATATATTTAAGCAGAAAATGAATTGTTACTATTTTTTTC
CATACTTGAATTAATGAAAGTGTATTGCCCCTTGAAATAAAATCTCTTGG
CCACCCTGAACATTTCATAACACTCCATTCTATTCATTAAAAAACCAAGC
CTAAGCCATCTACAAAAGTCTACCCTATTGTCTATACACGATCAAAGCCT
GAC
ATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTAAAATAGTTCCAAAGAGTTTTCTAAGA
AAAGGAAAATTCTCCCAGACCTATGGCATCACTTGGAGGCAGTGGCAGGG
AGAACTCTGAGCTTGAAGCCAGCCTGAGCTATATAATGAGATCTCCTCTG
GGGTTGGGAGGTGGGGTTGGGTTGCCTTAACACAGTATTTCATAGCACAG
TTGATAATCTACCATCTGCTTCTGCAATTAAAAAAAAAGGTCCCATATCC
TCGACTGTTTACTCACCTTAGTTATATTTGCATTACAATGTATGCACTAA
AATCATTTCTGTGCTTACCGATTACATTAATATAAGGAGTCACTGACAGT
GTGTGGCTGATGAGGTTAGGACAGCAAACCGGCCTTGCCCATCTCACTTG
CTTTATTGTCCTTTTACCTCATTGGTCTGCCTTTGTTGTATACAGTGATG
TCGCATCTACTACCATTATTTTCATGTTGTTGTATACCTTAATAGATTAC
CCCTTTATTTCTGCCTAATCATCTATCCTAGTGACTTTTATTCTGGCCAC
ATTCCTCATTATCTCCTGTACTGTTTGTTCCCTCCCGCTCCCTACTCTTT
GTATTTTTCTTTGTTTCCTGATGACAATTGCCTCCCTCATCTCAATATCT
CTCTGTACCGTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no129_n13.g1 MSMg01no129_n13.g1 CHROMAT_FILE:
MSMg01no129_n13.g1 PHD_FILE: MSMg01no129_n13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:43:24 2005
         (263 letters)



>mm_chr6_3446307_3446970
          Length = 664

 Score =  456 bits (236), Expect = e-133
 Identities = 257/264 (97%), Gaps = 1/264 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctaaaatagttccaaagagttttctaagaaaaggaaaattctcccagacctatggcatca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||
Sbjct: 201 ctaaaatagttccaaagagttttctaagaaaaggaaaattctcccagaaatatggcatca 260

                                                                       
Query: 61  cttggaggcagtggcagggagaactctgagcttgaagccagcctgagctatataatgaga 120
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttggaggcagtggcagggagatctctgagcttgaagccagcctgagctatataatgaga 320

                                                                       
Query: 121 tctcctctggggttgggaggtggggttgggttgccttaacacagtatttcatagcacagt 180
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 321 tctcctctggggttgggaggtggggttgggttgtcttaacacagtatttcatagcacagt 380

                                                                       
Query: 181 tgataatctaccatctgcttctgcaattaaaaaaaaa-ggtcccatatcctcgactgttt 239
           ||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||
Sbjct: 381 tgataatctaccatctgcttctgtaataaaaaaaaaaaggtcccatatcctcgactgttt 440

                                   
Query: 240 actcaccttagttatatttgcatt 263
           ||||||||||||||||||||||||
Sbjct: 441 actcaccttagttatatttgcatt 464


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 263
Length of database: 664
Length adjustment: 9
Effective length of query: 254
Effective length of database: 655
Effective search space:   166370
Effective search space used:   166370
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)