BAC Information

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BAC

Clone NameMSMg01-129P12
Chromosome6 (Build37)
Map Location 10,638,763 - 10,639,339
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC330264
Downstream geneLOC100040285, LOC667650, AA545190
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-129P12.T7 (MSMg01no129_p12.b1)MSMg01-129P12.TJ (MSMg01no129_p12.g1)
ACCAG337842AG337843
length726730
length of high quality
(start - end)
575 (64 - 638)578 (71 - 648)
definitionCHROMAT_FILE: MSMg01no129_p12.b1 PHD_FILE: MSMg01no129_p12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:33 2005CHROMAT_FILE: MSMg01no129_p12.g1 PHD_FILE: MSMg01no129_p12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTATTG
ACTATCCAGAGAAAAGATTGTAGGAGCCAGAGGGATCAATGACACCAGAA
CAAAACACACTACTCCTAAGGTCTCGCAGTGACTGAACTGAAAATCAGGG
AGCCTGCAAATGTCCAACCTTGTTCCTAGGTATACATATTATAATTTGGT
AGCTTGGTGCTTTTATGGGACTCCTTACAAAGGGAAGGGGATATTCTATT
GCTTTTGCCTGATTTGGGACCCTTGTTACACTACTGGTTTGTCTCATCCA
GTCTTAATATGAGGGAAAGCACCTAGTCTCATTGCAAATGGATATCCAAT
GTAGGAATGATATCTATAGGAGGTCTGTCCATTTATGAAGAGAAATGGAG
GAAAGGACGACGGTAAAGGGAAGAAAGGTAAACTACAGTCAGCATTTAAT
ATATGTGAGAATACATTAATAAAAAGTGAATTTTATGTGCTGATTTTATG
AATTGCAACATTACTGGATTCACAAATTAGTTCTGTATATAGTTTAGTGA
TATGTTTAAAGATTTCTTTGTATAAGGCCATGTTAAATGCTCCCATATGT
ATAATTATTCTTGCTCCCATTTTCCTTCACTTGATAGCACATATAACACT
ATTTCTAATAGTATAGTAGGATATGTTATTTCTGCATTATTTTTGGGAGT
GGGGCTATAGTATATAATTGTTGTTN
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTTGTATATATTAGATATTAGCCTTCTATC
AGATTTAGAATTGGTAAAGACCTCTTCCTAATCTGTTGGTTGTATTTTGG
TCTTATTGACAGTGATTTCTGCCTTACAGAAGCTTTGCCATTTTATGAGG
TCCCATTTGTTAATTCTTGATCTTACAGTACAAGCCAATTTTGTTGTGCT
CAGTAATTTTTTTCCTGTGCCCATATGTTAGAGGATCTTCCTCACTTTCT
CCTCTATAAGTTTCAGTATCTTAAATTTTTCTGTGGAGGTTTTTGATCCA
CTTAGACTTGAGCTTTGTACAAGGAGATAAGAAGAGTTTAACTAGCGTTC
TTTTACATGTTAACTGCCATTTGAGCCAGCACCATTCTACATCCTGTCTT
TTCTCCACTGGATGGTTGTATATTGCTAAAAATGTTAATTCAGTTAAAAG
CACAACTTAATTAAATAATAGAAAGAAGGTGAGAGAATAAAAATTGTAAA
CTTGTACTCCTGTATCTGGTAGAAAAAATATAGTTGGTAATGATGGATAA
TTCTCACTGGAAAATAAGTTTTCATACTGGATTCACTGTGCACTGTGGTC
CTTCAACCACTGACCTATTCCTTGTTATGGGGTTTGACATTTACAAGCAT
ACAGTCGTGTTTTCCCCCTATTCATATAGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no129_p12.g1 MSMg01no129_p12.g1 CHROMAT_FILE:
MSMg01no129_p12.g1 PHD_FILE: MSMg01no129_p12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:43:33 2005
         (578 letters)



>mm_chr6_10638563_10639539
          Length = 977

 Score =  996 bits (515), Expect = 0.0
 Identities = 563/579 (97%), Gaps = 3/579 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgtatatattagatattagccttctatcagatttagaattggtaaagacctcttccta 60
           |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct: 201 tttgtatatattagatattagctttctatcagatttagaattggtaaagatctcttccta 260

                                                                       
Query: 61  atctgttggttgtattttggtcttattgacagtgatttctgccttacagaagctttgcca 120
           |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct: 261 atctgttggttgtattttggtcttattgacagcgatttctgccttacagaagttttgcca 320

                                                                       
Query: 121 ttttatgaggtcccatttgttaattcttgatcttacagtacaagccaattttgttgtgct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttatgaggtcccatttgttaattcttgatcttacagtacaagccaattttgttgtgct 380

                                                                       
Query: 181 cagtaa-tttttttcctgtgcccatatgttagaggatcttcctcactttctcctctataa 239
           |||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct: 381 cagtaattttttttcctgtgcccatatgttaaaggatctccctcactttctcctctataa 440

                                                                       
Query: 240 gtttcagtatcttaaatttttctgtggaggtttttgatccacttagacttgagctttgta 299
           |||||||||||||  |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtttcagtatctt-tatttttttgtggaggtttttgatccacttagacttgagctttgta 499

                                                                       
Query: 300 caaggagataagaagagtttaactagcgttcttttacatgttaactgccatttgagccag 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 caaggagataagaagagtttaactagcgttcttttacatgttaactgccatttgagccag 559

                                                                       
Query: 360 caccattctacatcctgtcttttctccactggatggttgtatattgctaaaaatgttaat 419
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 560 caccattctacatcctttcttttctccactggatggttgtatattgctaaaaatgctaat 619

                                                                       
Query: 420 tcagttaaaagcacaacttaattaaataatagaaagaaggtgagagaataaaaattgtaa 479
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tcagttaaaagcacaacttaagtaaataatagaaagaaggtgagagaataaaaattgtaa 679

                                                                       
Query: 480 acttgtactcctgtatctggtagaaaaaatatagttggtaatgatggataattctcactg 539
           ||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||
Sbjct: 680 acttgtactcctgtatccggaagaaaaaa-atagttggtaatgatggataattctcactg 738

                                                  
Query: 540 gaaaataagttttcatactggattcactgtgcactgtgg 578
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 739 gaaaataagttttcatactggattcactgtgcactgtgg 777


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 977
Length adjustment: 10
Effective length of query: 568
Effective length of database: 967
Effective search space:   549256
Effective search space used:   549256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)