BAC Information

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BAC

Clone NameMSMg01-130A20
Chromosome6 (Build37)
Map Location 73,043,552 - 73,043,933
singlet/doubletsinglet
Overlap geneDnahc6
Upstream geneSt3gal5, Atoh8, Sftpb, Usp39, 0610030E20Rik, Tmem150, 2500002L14Rik, Vamp5, Vamp8, Ggcx, Mat2a, Sh2d6, Capg, Rbed1, Retsat, Tgoln1, LOC100038890, Tcf3, Kcmf1, Tmsb10
Downstream geneSuclg1, Olfr210-ps1, 4931417E11Rik, LOC100043338
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-130A20.T7 (MSMg01no130_a20.b1)MSMg01-130A20.TJ (MSMg01no130_a20.g1)
ACCAG337905AG337906
length7081,171
length of high quality
(start - end)
194 (125 - 318)383 (469 - 851)
definitionCHROMAT_FILE: MSMg01no130_a20.b1 PHD_FILE: MSMg01no130_a20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:40 2005CHROMAT_FILE: MSMg01no130_a20.g1 PHD_FILE: MSMg01no130_a20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCTATAATTGCGGCGCTAAACGACTCCTATAGTCACAGATCCGCGGAAT
TACTTCCCCTTTCCAAAAGGAGCCATCATCTCTGGCAAAAGGGATCTATG
GCTCTCCAATTAACATATACCCCTGATAAAGGAAATGACTCCCCAATTAA
CATATACCTGTGGTGTCAGTCAGCATTTCAAAGTCCATGCTAGAATCCTT
AGTCTTCTAAGTGTGGGTCCCAAACAGCTGGAATGGGGCTATCTGAAAAC
CTGTTGCCTGTACCTGAGATATGTTCTTCTAGCTGGGCTGCCTTGTCTGG
AATGAGTGGGAGAGAAAGCATTTTTCCTCACAGAGACTTGAAGTGCCAGG
GCAGGGGTAAACTAGGTCCCGGTGCGNNCCCACCTGCTCAGAAGAGAAGG
GGAAGGGGAAGAGCCCAACGAATAAAAAAAAAAGTGACCGGGAGGTGAAG
GGGGCAGTGAGCGCGATGTAAAGTGAATAAGTAAAAAATAAACAAATAAA
TATATAACTACATCAATAAATAACTAAATAAAAGTCCATACTAGCATCCT
AGCCCTGCTCACTGCCTCCATGACCCCAAATTTCCTCTAGCTCATGGGCT
TCCCACCTGCCAGCTATTTCTCCTTCCTATACCCAGCTACTTCTCCTTCT
TATCCCCAGTTATTTATCATCCTTCTTATATCCCGTTATTTATCCTTCTT
ATATCCAC
NCCGGCTCCTTNNNAACTCATCGGAGCTGGGGCGCCXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTAAGGTCCTATNTTTGGNTTTT
TGAAGNAAGGGTGACTTTAAAACATTGANTTCNGNCTGGGGTGGGGGGAC
TACTATAAAACTGTCTTCCAGAGATGATGTGGCTTTCTATTCATGACTCA
CACAGCAGCTTTGGCTATCTGCACAAGTCCTGCATGTGTTCTCGCCAGTC
AATGTTCCAGCATGGATGGGGAGGGGGCCCATGAGGCCATACCCTTGCTA
TGAAGCTACTGATATTTGATGGCCCATGATATTGGGTGAGTCAGCTTTTT
CCAAGAGGATAGCCCCTAGTAGGTTGCACATGATTCAGTAGATGGCCCTT
TTTTTTGCACACATGGGAGACACTAAACGTACTTGGTGGGTTATAATAAG
CTATTTTACCCCCCCACGAAGGGGGGGGGCGCATGTGACAAAGGTCCTGG
GGGATTTGGAGGACAATGTAAGCAGATGCAATTCTCAAAGAATAAAATAT
ACAATTTCTGTTAAAAAGAGTCTGTTTAGACTTTCTTAGGCCTTCTTGAG
ATTTTCTTTTAGATTTGAATAGGTAATTTGTACATTATGAAATGGGCTTC
TTCTCTCATAATTAGTGAAAGTATTACAAGTATTTATTGTCTTGTTTATG
CTAAGTCTTTTGCTACTCATCACTCTGCAGATTTTCCCTCAGAACAAATG
TATTTATATTCAGATTATTGCTTCTAGATAGAGATTTAACATTTTTACTA
AATTTTAATGTATTCATGTGTGTGTGTGTGCGCACGCGCATGGAGGTCAG
AGGATAACTTTCAGGGTGCCTGCCTCTCCCTACATGTGAGGCCTGGGGAT
CAATCCCCGGTTCCTTTTACCTGCTGAGTAGCAGACTTTCCCCCACACTC
TGCCAATGCCCTATCTTAATTTAAAAAGTAAAGTTTTTTTTTAAGGGGGG
GGGGGGGTGGAAGTGTGTAAAGGGGTGGGGCCCTGCATGGGTGCCTTTTA
TGTTGGGTATTAAAAACCCCCCCGCTCAAAAAAGTTTAAAAACCTCCCCT
TTTGGTCCCCTGTAAAAATTATTCGGGATTTTCAAATTATATTTTTCCCT
GTGAGATTAATTCTTCCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no130_a20.g1 MSMg01no130_a20.g1 CHROMAT_FILE:
MSMg01no130_a20.g1 PHD_FILE: MSMg01no130_a20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:43:41 2005
         (383 letters)



>mm_chr6_73043350_73044133
          Length = 784

 Score =  708 bits (366), Expect = 0.0
 Identities = 378/382 (98%), Gaps = 1/382 (0%)
 Strand = Plus / Plus

                                                                       
Query: 3   gggggggggcgcatgtgacaaaggtcctgggggatttggaggacaatgtaagcagatgca 62
           |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gggggggggcacatgtgacagaggtcctgggggatttggaggacaatgtaagcagatgca 262

                                                                       
Query: 63  attctcaaagaataaaatatacaatttctgttaaaaa-gagtctgtttagactttcttag 121
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 263 attctcaaagaataaaatatacaatttctgttaaaaaagagtctgtttagactttcttag 322

                                                                       
Query: 122 gccttcttgagattttcttttagatttgaataggtaatttgtacattatgaaatgggctt 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gccttcttgagattttcttttagatttgaataggtaatttgtacattatgaaatgggctt 382

                                                                       
Query: 182 cttctctcataattagtgaaagtattacaagtatttattgtcttgtttatgctaagtctt 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 cttctctcataattagtgaaagtattacaagtatttattgtcttgtttatgctaagtctt 442

                                                                       
Query: 242 ttgctactcatcactctgcagattttccctcagaacaaatgtatttatattcagattatt 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ttgctactcatcactctgcagattttccctcagaacaaatgtatttatattcagattatt 502

                                                                       
Query: 302 gcttctagatagagatttaacatttttactaaattttaatgtattcatgtgtgtgtgtgt 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gcttctagatagagatttaacatttttactaaattttaatgtattcatgtgtgtgtgtgt 562

                                 
Query: 362 gcgcacgcgcatggaggtcaga 383
           ||||| ||||||||||||||||
Sbjct: 563 gcgcatgcgcatggaggtcaga 584


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 383
Length of database: 784
Length adjustment: 9
Effective length of query: 374
Effective length of database: 775
Effective search space:   289850
Effective search space used:   289850
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)