BAC Information

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BAC

Clone NameMSMg01-130D06
Chromosome6 (Build37)
Map Location 128,940,763 - 128,940,961
singlet/doubletsinglet
Overlap genenone
Upstream geneTspan9, LOC100043853, LOC667560, Tead4, LOC652986, Tulp3, 5930416I19Rik, Foxm1, Nrip2, Itfg2, Fkbp4, EG667598, Pzp, LOC384494, EG667610, BC048546, Klrb1a, EG545878, LOC677440, Clec2h, LOC100043863, LOC100043861, Klrb1c, LOC100043862, Klrb1d, LOC667706, Clec2i, Clec2g, LOC667715
Downstream geneBC064078, Clec2f, Klrb1f, Clec2e, Klrb1-ps1, Clec2d, Cd69, 4922502D21Rik, Clec12a, 4933425B16Rik, Clec1b, Clec9a, Clec1a, Clec7a, Olr1, D630042F21Rik, Gabarapl1, Klre1, Klrd1, Klrk1, Klrc3, Klrc2, Klrc1, LOC640755, Klri1, Klri2, Gm156, Klra17, Klra5, LOC667764
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-130D06.T7 (MSMg01no130_d06.b1)MSMg01-130D06.TJ (MSMg01no130_d06.g1)
ACCAG338016AG338017
length732770
length of high quality
(start - end)
199 (123 - 321)297 (72 - 368)
definitionCHROMAT_FILE: MSMg01no130_d06.b1 PHD_FILE: MSMg01no130_d06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:53 2005CHROMAT_FILE: MSMg01no130_d06.g1 PHD_FILE: MSMg01no130_d06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TCATGTGGTTACGCACTAAGAAAGGGAATTGTTTGCCCTGGGATTGGTCA
GGGGATCCGTTTATAGCTCCGCACTGTTTTCTTTTCTACCTGTACCTCCA
CAGCCTCTCTTTAATGCTGTCTATAGCAAAAATCAGCATCATTGTGTATT
ACTAGAGTTGCCAAATTTGGAGACTCTATAATGGATACTCATCAAAATTA
AAATAAATCCCCAAATTAATCACAACTGGGGATGGAGTAGGCTTTTCACA
CTCATGACCCCATTTCCTTCATTAGGAGCACACCTTGTCTAGCAAGGCCA
TATCTCCTATTTTTTTCCTCCCCCCCCCCCCCAACTAGGTACCAAGCATT
TGAATATTTGAGTCTACGGCCACATAACAATTCACCATAGTGTTATATAG
AAATATGGGTAAAGGACTTTATGAGCCATCTCTGCTAAAGGGAAACATTG
TTCTGTTCATGGTAAAGCTCTTTGTCATGTACTAAGTGCTGTGCAAGATC
GGTCATTTATGCATAAGTTAGGATCACAACTTGAACAAGACAATTAACAA
CGCCTAAAAACTTCCCCATTGTTACAACACTCCTTTTCTATCATTGAATT
TTTGGGCCAGGCGTAAATAACTCCAACCGCAAAAATTTTCTTAAACCCCG
TTTTTAACCCCCCCTTTTGCTTTCAATTAAAN
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTCCCGAAATATCATTTTTGAAGTCCAAAACCTGCAGATGT
ATGCTGATCTTCTGTTTTCTGCTTGGCACCTGTCTGGGAACCAAGAAAGT
AGAAACTGGTCTCAGTATTTGTCCTAGGGGCAGAGGAAGTTAGGAGACAT
CCTGCTTCCTCTCTGGTTCCCACTGGGAGAACATCTGGTTCTGGGTCATG
TTTGTGAGATATCTGGTTCTCCTTCATCTCCTTCCCAACTCTATTGGCTG
TCCTTGGCATGCAAGTATGTCTGTGTCTGTCAGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGCGTGCCGCCAAAACCCTCCTTTTTC
TTCTTCCTAATTTTCCCCCCCCCCTTTTATTATTTACTCTCCCTTTTTTC
TTTTTTCTTCCACCACCGTTTCCTTTTTCTTTACTTTCTTCCCCTTTTCC
CTCCTTTCTACCCCTTTCTTTCCATATTTCTTTTTTTTTCCTTTCCCTCT
ATTCTTTCCCTACTTTTCTTTTTATTGCCTTCTTTTTCTCCTTCTCTCCA
TCTCTTTTGGTTTTTTTTTTTTTTTTCTCTCTCCTTTCCCTTCTTTCTTT
TTTCTCCCTCTTTCCTTTGCTCTTCCACTTTTCCCCTCCCTCTTATCTTC
TATTTTCCCTTCCCCCTTTTTCCCCCTCCTTTTTCCTTCCCCCCCATTCT
TTCTCTTCTTTTCTCCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no130_d06.b1 MSMg01no130_d06.b1 CHROMAT_FILE:
MSMg01no130_d06.b1 PHD_FILE: MSMg01no130_d06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:43:53 2005
         (199 letters)



>mm_chr6_128940563_128941161
          Length = 599

 Score =  369 bits (191), Expect = e-107
 Identities = 197/199 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgttttcttttctacctgtacctccacagcctctctttaatgctgtctatagcaaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actgttttcttttctacctgtacctccacagcctctctttaatgctgtctatagcaaaaa 260

                                                                       
Query: 61  tcagcatcattgtgtattactagagttgccaaatttggagactctataatggatactcat 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 261 tcagcatcattgtgtattactagagttgccaaatttggagactctataatggatcctcat 320

                                                                       
Query: 121 caaaattaaaataaatccccaaattaatcacaactggggatggagtaggcttttcacact 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 321 caaaattaaaataaatccccaaattaatcacaactggggatggagtaggcttttcacatt 380

                              
Query: 181 catgaccccatttccttca 199
           |||||||||||||||||||
Sbjct: 381 catgaccccatttccttca 399


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 199
Length of database: 599
Length adjustment: 8
Effective length of query: 191
Effective length of database: 591
Effective search space:   112881
Effective search space used:   112881
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)