BAC Information

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BAC

Clone NameMSMg01-130F20
Chromosome6 (Build37)
Map Location 55,062,403 - 55,211,819
singlet/doubletdoublet
Overlap geneCrhr2, Inmt, C330043M08Rik
Upstream geneLOC666305, Chn2, LOC100042056, Prr15, EG640926, Wipf3, Scrn1, Fkbp14, Plekha8, LOC100041292, 2410066E13Rik, Znrf2, Nod1, A030007L17Rik, Gars
Downstream geneAqp1, Ghrhr, Adcyap1r1, LOC100042219, Neurod6, LOC100041339, Ccdc129, Gsbs, LOC100041357, Pde1c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-130F20.T7 (MSMg01no130_f20.b1)MSMg01-130F20.TJ (MSMg01no130_f20.g1)
ACCAG338136AG338137
length722714
length of high quality
(start - end)
290 (68 - 357)177 (418 - 594)
definitionCHROMAT_FILE: MSMg01no130_f20.b1 PHD_FILE: MSMg01no130_f20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:44:07 2005CHROMAT_FILE: MSMg01no130_f20.g1 PHD_FILE: MSMg01no130_f20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:44:07 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,211,530 - 55,211,819)(55,062,403 - 55,062,579)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTC
TCTAGTTTCCCACTGAAAGTGATTGGAAAAAAGAATTCATCCATCAGGGC
TCAATTCCCTTCCTGTGCCAAGTGCATCCATAAATTGCTAGGAGTGCATT
TCTAACAGCCTGAAAACTACAGACTTGGTCTTCTGTGTGGACTCTGTTGT
TATCCTCTTAGTCATAGGGACAGTTTTGGGACACCAGTGTGTTTAACAAC
AATGCAGAAGCTGGAGTCCCATCCTCTCCCGTCTCTGAAAGAAACCCAGT
CCCTTTGATTGGTTTGTTACACCTTGCTGGGCAGTCTCTGGGTGCCTCCA
AGGGCTGATCACCACCCGCCACTGCCTTGTGCAGAGAACCACAGCTGTGG
GTATGGATGGCCAGAGCATGGGTGGCCAGCTCTGGGTTCCCTTTTATGTG
CCTGGCCCTCTGTAGCTTCAAAAGCTGGACGGAGAACATAGGGAACAAAA
AAGGAAAGGGGAAATAAACTCTAAAAACATCTTTACATCATGATCTATGT
GCTAAGTAAACACAGGTCAGCGGAACAACCAAAAGCTGGCTGTGCTTCTA
GGAGCGTCTAGATTTTCTTCTGGATCCTGGCTGAGAGGCTGGTGTGGGAC
AGCAGGCACAACACTCCATCCTGCAGGAACCTCTAGCCAAAGGAGGGACA
AGTCACCCTAGCAATTGATGGT
TGTGGGAGGCCTGGNGACGCCTGGTTTCGAATCGGGGTGAACTATAGAAG
GTTACAAGATAACTGGTCCTGACCGAATGCTGTGGACAGTCAGTCAGCAC
CTTTGGGCCCTGAAGAATGAAAGCCCTCACACCTTCAAAGTCCTCCTCTT
TCCTGCTCACATACCCTCTCTCTACGTGACACACCACTGCCTCCATACTT
CCAGCTCTAGTGAAACACTTCCTCCAGGAAGCCTTCCCAACTTACTGCCC
ATCCTCCCATTGGCTCTGGCAGCCATCACTGCTATTTCACCTCAGGACAG
AGTTTTTTGTCTTCTGGGCTCCTTCCACACAAAGTGAGTGGATGTTTTAT
TATGCCCCCCCCTCTTCCTGCCTGAAGTGACAGGGCAAGGTGGCTGGAGG
CACATGGACAGATGTAGGTACTGCTGGCAGTGTCTCCACATCTGCTCTCT
CTCCCCTACTCCCCACTATGTCTCCACACCTCATGTGATGGGGAAGCCAA
CCCTGCCTTCCCTCTCTCTCAGGAGGAAAATAGTCTTCACACATTCCTGC
TTGTAGAAAATGATGAAAGAGTCTGGGGGTAACCACGTGTCCCCAAAGAC
AGAGGCAGCCCAGTTCCTAGGTCTGCAGCTTCTAACCCCTTACTCCATAG
GCTCTGGTCTGTCTTGTGCCCTCAGACCTGTAGCTTTAACAAATGCCACA
TGTTTGCTGTCAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no130_f20.b1 MSMg01no130_f20.b1 CHROMAT_FILE:
MSMg01no130_f20.b1 PHD_FILE: MSMg01no130_f20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:44:07 2005
         (290 letters)



>mm_chr6_55211330_55212019
          Length = 690

 Score =  499 bits (258), Expect = e-146
 Identities = 282/290 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtgattggaaaaaagaattcatccatcagggctcaattcccttcctgtgccaagtgcat 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 490 agtgattggaaaaaagaattcatccatcagggctcaattcccttcctgtgtcaagtgcat 431

                                                                       
Query: 61  ccataaattgctaggagtgcatttctaacagcctgaaaactacagacttggtcttctgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 ccataaattgctaggagtgcatttctaacagcctgaaaactacagacttggtcttctgtg 371

                                                                       
Query: 121 tggactctgttgttatcctcttagtcatagggacagttttgggacaccagtgtgtttaac 180
           |||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct: 370 tggactctgttgctatcctcatagtcagagggacagttttgggacaccagtgtgtttaac 311

                                                                       
Query: 181 aacaatgcagaagctggagtcccatcctctcccgtctctgaaagaaacccagtccctttg 240
           |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct: 310 aacaatgcagaagctggagttccatcctctcctgtctctgaaagaaacccagtccctttg 251

                                                             
Query: 241 attggtttgttacaccttgctgggcagtctctgggtgcctccaagggctg 290
           |||||||||  |||||||||||||||||||||||||||||||||||||||
Sbjct: 250 attggtttgggacaccttgctgggcagtctctgggtgcctccaagggctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no130_f20.g1 MSMg01no130_f20.g1 CHROMAT_FILE:
MSMg01no130_f20.g1 PHD_FILE: MSMg01no130_f20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:44:07 2005
         (177 letters)



>mm_chr6_55062203_55062779
          Length = 577

 Score =  335 bits (173), Expect = 1e-96
 Identities = 176/177 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtactgctggcagtgtctccacatctgctctctctcccctactccccactatgtctccac 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 201 gtactgctggcagtgtctccacatctgctctctctcccctactccccactatgtttccac 260

                                                                       
Query: 61  acctcatgtgatggggaagccaaccctgccttccctctctctcaggaggaaaatagtctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acctcatgtgatggggaagccaaccctgccttccctctctctcaggaggaaaatagtctt 320

                                                                    
Query: 121 cacacattcctgcttgtagaaaatgatgaaagagtctgggggtaaccacgtgtcccc 177
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cacacattcctgcttgtagaaaatgatgaaagagtctgggggtaaccacgtgtcccc 377


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 177
Length of database: 577
Length adjustment: 8
Effective length of query: 169
Effective length of database: 569
Effective search space:    96161
Effective search space used:    96161
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)