BAC Information

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BAC

Clone NameMSMg01-130G09
Chromosome6 (Build37)
Map Location 94,058,107 - 94,058,345
singlet/doubletsinglet
Overlap geneMagi1
Upstream geneLOC384461, LOC100043253, LOC665831
Downstream geneLOC100043262, LOC665856, Slc25a26, Lrig1, LOC625941, EG665865, LOC100043276, LOC100043680
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-130G09.T7 (MSMg01no130_g09.b1)MSMg01-130G09.TJ (MSMg01no130_g09.g1)
ACCAG338161AG338162
length718722
length of high quality
(start - end)
247 (63 - 309)128 (185 - 312)
definitionCHROMAT_FILE: MSMg01no130_g09.b1 PHD_FILE: MSMg01no130_g09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:44:10 2005CHROMAT_FILE: MSMg01no130_g09.g1 PHD_FILE: MSMg01no130_g09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:44:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AGAATTTGCGGCGCTAAACGACTCCTATATTCAGAAGAGCGCGGAATTCG
TTCCCTTTCTCTGATTCTGATAGAAGACAGCATACTGCCCTGACTCCTGC
CTTGACCTCAGCTTCTCCTTTAGTTAGCTTTATATCTCCTAGCTGGGGAG
AGTGAGGGGCTATCTCAGCATCTCCTTTAATAGGGATATCATATGGAAGA
AGCATGAGGAGGGACAAGGACAGTGTGCATGAGGAGGAGCAGGATGGACA
GAAGGTCAAGAGCAACTGGGAAGAAATGATATCCACATTATCTACTGGCA
AGAAATGACATCTTTATTATCTACTGGGAAGAAATGATATCCACATTATC
TACTGGGCACAAACGACATCCTCATTATCTATTGGGAAGATTCGGCATCC
ACATTACCTCCTGTCTATCATTAACTAAAATTTGAGCACACTCACCCCCA
GAGACAGCTGAATTTGCATTTGCTTCTCCTTAATAATGGGCTCTATAATG
GCCTGAGCATACATATATCGCATTTCACTGTTTCACAGTACAGTTTTTGG
ACCTGACCACTGTTTTTTCTCAAGTACACTTAGAAGAACACTTAATCTGC
ACCACAGGCTTGAACATTGAGCTTCTGAAACTTGACACTTGGCATGTATC
CTATAATAAAGGAGGCCAAGCCTGTATCCCCTTTTTCTTTTTGTTTGCAC
CCCCCTGATCCATAGTCC
ATACAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXACTAGTTAGAAAGGGCTTTACGATACATTT
TATATAATTGCTATTTGCTCCCGTTTAAAAAAATAGTTTTTTATTTTTAA
ATCTATAAAAATGGGGCTAGCAGGTTGGCTTGGGAGGTAAAGGTGCTTCC
TGACAATCATGATGCCCTGAGTTGGATCCCTGGAGCCTTCATGGTATAAA
GAGACAGCCAAACCCTGTAAGTTACTCTCTGACTTCTACAAGTACACCAT
GGCATGTCCCCACCCCCCTTTATGTCACATAGCCTTTACAGATGTATGCT
TTCCTCTTATTTATTCTCCCCCCCCCCCCCCTGCTATACTATTCATATCC
AAATCTCCAAGTCCCCTAAACACAAAAAAAAAGATATTTGCGTGTAGGCT
TATGCAGCCTGCCCTATGTACTTTATTAAGTTCCTCCCTAGGCTCCCCTT
AATACCTAATGAACCGCTTTGCGCAGGAATTAGTTGAGATGCTTTATTTT
TTAGAGAGCCATGCTAAGAATGGAAATTTGCATATTGGACATACATGCCT
TCTTTTGAACCTTCCGGCGTGTAACTCATATTACCGTTCTATCGCCAGAC
CAAAAAATTACTTCCCTTAAAGTATTCGAGCGCGATTCGCTTTATTTGCG
ACTGCCCTTAGTTCCATTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no130_g09.b1 MSMg01no130_g09.b1 CHROMAT_FILE:
MSMg01no130_g09.b1 PHD_FILE: MSMg01no130_g09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:44:10 2005
         (247 letters)



>mm_chr6_94057907_94058550
          Length = 644

 Score =  418 bits (216), Expect = e-121
 Identities = 235/242 (97%), Gaps = 3/242 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   gattctgatagaagacagcatactgccctgactcctgccttgacctcagcttctccttta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gattctgatagaagacagcatactgccctgactcctgccttgacctcagcttctccttta 260

                                                                       
Query: 61  gttagctttatatctcctagctggggagagtgaggggctatctcagcatctcctttaata 120
           || ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gt-agctttat--ctcctagctggggagagtgaggggctatctcagcatctcctttaata 317

                                                                       
Query: 121 gggatatcatatggaagaagcatgaggagggacaaggacagtgtgcatgaggaggagcag 180
           || || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 318 ggaatttcatatggaagaagcatgaggagggacaaggacagcgtgcatgaggaggagcag 377

                                                                       
Query: 181 gatggacagaaggtcaagagcaactgggaagaaatgatatccacattatctactggcaag 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 378 gatggacagaaggtcaagagcaactgggaagaaatgatatccacattatctactgggaag 437

             
Query: 241 aa 242
           ||
Sbjct: 438 aa 439


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 644
Length adjustment: 9
Effective length of query: 238
Effective length of database: 635
Effective search space:   151130
Effective search space used:   151130
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)