BAC Information

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BAC

Clone NameMSMg01-130L19
Chromosome6 (Build37)
Map Location 52,985,486 - 52,985,775
singlet/doubletsinglet
Overlap geneJazf1
Upstream geneLOC666391, Hoxa1, Hoxa2, Hoxa3, Hoxa4, Hoxa5, Hoxa6, Hoxa7, Hoxa9, Hoxa10, Hoxa11, Hoxa13, Evx1, EG666487, 1700094M24Rik, EG545841, Hibadh, Tax1bp1
Downstream geneLOC666259, LOC666516, D430007I03, Creb5, LOC384386, 1200009O22Rik, Cpvl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-130L19.T7 (MSMg01no130_l19.b1)MSMg01-130L19.TJ (MSMg01no130_l19.g1)
ACCAG338414AG338415
length1,199705
length of high quality
(start - end)
90 (580 - 669)290 (71 - 360)
definitionCHROMAT_FILE: MSMg01no130_l19.b1 PHD_FILE: MSMg01no130_l19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:44:40 2005CHROMAT_FILE: MSMg01no130_l19.g1 PHD_FILE: MSMg01no130_l19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:44:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCTTACTGTNNNNNGCTCACTGCGCGAAAACACTTATATAGGGAGAGC
ATCCGCGGTACTTCAGCGGAAGTAATGCCCCTTAAAGCGGTTCTTTGGCC
ATCTGTCATTGACCGCTACCCTTAAAGAATTAGGAAATAAGCATAGAAAA
GAGCTCTCTGAAAGGCTCCATCCTGTCCGGTGTTAAGGTCCTGTCACAGT
ACACGAGAACAGATCAGCCACTCGCATTTCCTCCCCTTCTATATCCAGTT
GGGTCTGCAGCTGATGCTGTTGCTTGCTCTCTGGTCGATTAACAATTTCA
GTGCTTGTCTGCAGACAAGGCAGGTACTTTCCAAAGACACATGATTTTCA
AACAGAGCCCTTATCAGTTATCTAAGCTCGTTGAATTCTCCACACATCTT
TGCTTTCCTGTTTATAATGCGCTTGCTGGAGGGGAGTCTTCACAATCATG
CTTCAGAGTTTTTTTTGCCCCTCCCACATTCAACCACTGGCAAGCCACAA
AGGAGATGGGTGCCAATGGTGATGGATGTGCCAAAGTAACACATGATACT
GGAGACAGAAACTCATGAACCTGGCAAGGAGGGGATGTTAGAGAAACAAG
GTCAGAGCAAAATTCCCAGCACGAAGGACTCTTGTGTCTCCACCAAATGA
CTTGAATTTGAGCTCTGGCGTAGATGGCCCACTGCTCTTTGGAGACGTTA
TACAGAGTTAGGTTGAAGAAGTGAGCACTATAGGAGCCTACAATCTGTTG
ACCAAAGGGGTGAAGGGCTCAGAAGTCAGTAAACATTTTAGGCCATCTTT
AATTTTTCTTTGCTCTTATACTTGGCTTCTAATCAAAGATTCTTCCTGCA
AACCATCTTTAAGTCACTCCAAGTCACTCCTCATGAAGTGGGGTCTACTT
TCTAAAGTGGTTTAAATGTTGCTTTTCCCAGCTATCCTGAAGTTAATCTT
TTCCCTTTAATTGCGAGTGTGCATGCGTGTAAGCGTGTGTGCAGGTTTAT
GCATTCAGGTTAAATTTTCCTAATTCAAGCTTGTAATCCATCCAAATCTG
GAAGTTTCCCCTAAAGGTTTTGTGTTTTTAAGGTTTTTGTAACTAAATTT
GGGGGAAAATTTAAAAAAGGGGTGTGAAAATTTGGGGGAGGGTGGGGTCT
TATCAAAAAGAAAATAATGTCCATGGGGAACCCTTTAAAAAGGACCCCC
CATTGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTTCCCCGCGAAATTCCATGGCTACCTTTTATCTATCAAGTCC
ACGAACTATTTTGAATATTTTGAAATAATTTGCATGTATTTCATACACAG
CCTGAAGACACATGTGACTGGTAGAATTTTGGATATCTGGATAAGAGCTT
TGAATGTCAAGGTATCATGGGTGCCTGGTGACACGTGGAACCAAAAGCAT
GTTGGCTCTGTATCCACGAACCCAGCACTTCCTGAATGTCCTCACCTTGG
AATGCAGTAAGCTGCTATTCTTCTTAGGAGAGGTGGAGAAGGCCCTCCTA
TGCTCTGGAGTAACTAGCCTGAACCAACGCAGTGACAGCATTTCCCTGGC
CCGCAGAGAAATGGCAATAAAGGTTAGCCACATTGGAGTGGCAGTTTTTA
AAGCTGTATGTGTCATCCTGCCCTTTTTCTGAGATGAGTGTGTGTATTAA
GTTTCTCTTAGGACGGTGTTTATGAAGAATGAGATAGCAGGTGTTTTGCT
TCCAAACTCTTCCTTACAATATAACATTGTTTTTGTCAGTCTGTGCCCTC
CCACCCTGCCTTTATTTCCTGTTTTTGTTGTTGTTGTTGTTTGGTTGGTT
TTGTGTGTGCGTGTGTGTGTGCCTCTTTATATCTCCCCCTTCTTTTTCTC
TTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no130_l19.g1 MSMg01no130_l19.g1 CHROMAT_FILE:
MSMg01no130_l19.g1 PHD_FILE: MSMg01no130_l19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:44:41 2005
         (290 letters)



>mm_chr6_52985286_52985975
          Length = 690

 Score =  522 bits (270), Expect = e-153
 Identities = 285/290 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttccatggctaccttttatctatcaagtccacgaactattttgaatattttgaaataatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 ttccatggctaccttttatctatcaagtccacgaactattttgaatattttgaaataatt 431

                                                                       
Query: 61  tgcatgtatttcatacacagcctgaagacacatgtgactggtagaattttggatatctgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 tgcatgtatttcatacacagcctgaagacacatgtgactggtagaattttggatatctgg 371

                                                                       
Query: 121 ataagagctttgaatgtcaaggtatcatgggtgcctggtgacacgtggaaccaaaagcat 180
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 ataagagatttgaatgtcaaggtatcatgggtgcctggtgacacgtggaaccaaaagcat 311

                                                                       
Query: 181 gttggctctgtatccacgaacccagcacttcctgaatgtcctcaccttggaatgcagtaa 240
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 310 gttggctctgtatccacgaacccagcacttcctgactgtcctcaccttggaatgcagtaa 251

                                                             
Query: 241 gctgctattcttcttaggagaggtggagaaggccctcctatgctctggag 290
           |||||||  | |||||||||||||||||||||||||||||||||||||||
Sbjct: 250 gctgctaggcatcttaggagaggtggagaaggccctcctatgctctggag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)