Query= MSMg01no130_n05.b1 MSMg01no130_n05.b1 CHROMAT_FILE:
MSMg01no130_n05.b1 PHD_FILE: MSMg01no130_n05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:44:49 2005
(732 letters)
>mm_chr6_11069497_11070627
Length = 1131
Score = 1193 bits (617), Expect = 0.0
Identities = 641/649 (98%), Gaps = 1/649 (0%)
Strand = Plus / Minus
Query: 84 agcattttaatacaatacatggacaacaccaaccaaagagttattgaacagtgagggaag 143
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 931 agcattttaatacaatatatggacaacaccaaccaaagagttattgaacagtgagggaag 872
Query: 144 aaataacaagggatatggtaccagcgtcctggctcattgtggtcactgtgaagttccata 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 871 aaataacaagggatatggtaccagcgtcctggctcattgtggtcactgtgaagttccata 812
Query: 204 gttctgaaagtaaattttgaagagaggtcttttaattcctctgaaaaacagagaatctag 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 gttctgaaagtaaattttgaagagaggtcttttaattcctctgaaaaacagagaatctag 752
Query: 264 aatctatgtgtgtactgtttagagaaacacaaagtgttctgtgggacatgtttaatgtaa 323
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 aatctatgtgtgtactgaaaagagaaacacaaagtgttctgtgggacatgtttaatgtaa 692
Query: 324 atatctcatataaatgtcgctacattttataaaaaaatatatctaggcttaacacttaaa 383
|||||||||| |||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct: 691 atatctcataaaaatgttgctacattttat-aaaaaatatatctaggcttaacacttaaa 633
Query: 384 taaagttattgctttcagagaaaagagctttgacacattttcccaggttgttcaatcaga 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 taaagttattgctttcagagaaaagagctttgacacattttcccaggttgttcaatcaga 573
Query: 444 tttttccttcccttaggccacttttggaatagagaagtacagcctgtcttcatttattgt 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 tttttccttcccttaggccacttttggaatagagaagtacagcctgtcttcatttattgt 513
Query: 504 attagaatgtcaaggtctctaaccatgtttgggtagggcatattgttcaggaactctgca 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 attagaatgtcaaggtctctaaccatgtttgggtagggcatattgttcaggaactctgca 453
Query: 564 acactgcagttttatttcctgctcataattcttataatatgtttactttgcccctaggta 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 acactgcagttttatttcctgctcataattcttataatatgtttactttgcccctaggta 393
Query: 624 ataatttctcaccattttctattttagtaagtgcattttattttttaatataccacaggt 683
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 392 ataatttctcaccattttctattttagtaagtgcattttattttttaatatgccacaggt 333
Query: 684 tacatattccaattaccagtgactgttttgatattacacatcatatcct 732
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tacatattccaattaccagtgactgttttgatattacacatcatatcct 284
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 732
Length of database: 1131
Length adjustment: 10
Effective length of query: 722
Effective length of database: 1121
Effective search space: 809362
Effective search space used: 809362
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no130_n05.g1 MSMg01no130_n05.g1 CHROMAT_FILE:
MSMg01no130_n05.g1 PHD_FILE: MSMg01no130_n05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:44:49 2005
(636 letters)
>mm_chr6_10906344_10907378
Length = 1035
Score = 1214 bits (628), Expect = 0.0
Identities = 634/636 (99%), Gaps = 1/636 (0%)
Strand = Plus / Plus
Query: 1 caacgaaataagagaacttccatgcctttctcagagaaacgagatattcgtagataatcc 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 caacgaaataagagaacttccatgcctttctcagagaaacgagatatt-gtagataatcc 259
Query: 61 taaaattaaattatatatgttgtaactctcttttatattctgcccaaatcattaaattaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 260 taaaattaaattatatatgttgtaactctcttttatattctgcccaaatcattaatttaa 319
Query: 121 gggaattgctttactttatatcaagtagaaaataatctaacaagagacagtatggcaatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gggaattgctttactttatatcaagtagaaaataatctaacaagagacagtatggcaatt 379
Query: 181 tccactaggtaatgaaatatctatgtggggccatttatcataatttatatatgatattac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tccactaggtaatgaaatatctatgtggggccatttatcataatttatatatgatattac 439
Query: 241 taacagttaaatgtattgagagtaatatcaaaagttccttacatgaattatgacaattaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 taacagttaaatgtattgagagtaatatcaaaagttccttacatgaattatgacaattaa 499
Query: 301 tatatctacagctataaaacttagatacctttattaatgaaaacactgagccacacaaag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tatatctacagctataaaacttagatacctttattaatgaaaacactgagccacacaaag 559
Query: 361 gaattatataacttatattatatgagaaactggctccaaaatggatatctacaataaatg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gaattatataacttatattatatgagaaactggctccaaaatggatatctacaataaatg 619
Query: 421 gaggtattcagcttttccaaataaacatcagtgtttcatttataatttcttcatgagtgg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gaggtattcagcttttccaaataaacatcagtgtttcatttataatttcttcatgagtgg 679
Query: 481 tgggctgatagataacaacattctattgaaatgtacacatattcttcatgtcattcctcc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tgggctgatagataacaacattctattgaaatgtacacatattcttcatgtcattcctcc 739
Query: 541 cccaggtgccaaaatgggcactggcaacatctttcctgactcctgggtgtatcctttatc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 cccaggtgccaaaatgggcactggcaacatctttcctgactcctgggtgtatcctttatc 799
Query: 601 caccagggctgaaaagctatagaagctctcctgcag 636
||||||||||||||||||||||||||||||||||||
Sbjct: 800 caccagggctgaaaagctatagaagctctcctgcag 835
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1035
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1025
Effective search space: 641650
Effective search space used: 641650
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
