Query= MSMg01no130_n24.b1 MSMg01no130_n24.b1 CHROMAT_FILE:
MSMg01no130_n24.b1 PHD_FILE: MSMg01no130_n24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:44:53 2005
(283 letters)
>mm_chr6_120285740_120286422
Length = 683
Score = 474 bits (245), Expect = e-138
Identities = 273/289 (94%), Gaps = 12/289 (4%)
Strand = Plus / Minus
Query: 1 tgcaacaaggtctcatcacgtagccctggctggtcaggtacttttctca------tctga 54
||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 595 tgcaacaaggtctcatcacgtagccctggctggtcaggtac------caggctgctctga 542
Query: 55 agcttatagagatcctcctgcttctgcctcccgagcactgaggccaccgtgcctggctag 114
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 agcttatagagatcctcctgcttctgcctcccgagcactgaggccaccgtgcctggctag 482
Query: 115 ggtttactttgtgatcggcctgaggagactatagagagagtagcacaaggatatttgaca 174
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 481 ggtttactttgtgatcggcctgaggagactatagagagagtagcacaaggacatttgaca 422
Query: 175 tcagcactggggttatgttcatttatttagtgcatgtgttctaaaatctaggaaagtaat 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 421 tcagcactggggttatgttcatttatttagtgcatgtgttctaaaatctaggaaaataat 362
Query: 235 aaaccattatctttctactaggtcatgtatgtcattaggaaaattccaa 283
||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct: 361 aaaccattatcttactactaggtcatgtatgtcattaggaaatttccaa 313
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space: 184676
Effective search space used: 184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no130_n24.g1 MSMg01no130_n24.g1 CHROMAT_FILE:
MSMg01no130_n24.g1 PHD_FILE: MSMg01no130_n24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:44:53 2005
(293 letters)
>mm_chr6_120114684_120115376
Length = 693
Score = 507 bits (262), Expect = e-148
Identities = 283/290 (97%)
Strand = Plus / Plus
Query: 4 ctgagtgacagcagccaaggcgccccagctgctcaggaggctggacgagacattaatgta 63
|||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct: 204 ctgagtgacagcagccaaggtgccccagctgctcaggaggctggaggagacattaatgta 263
Query: 64 aatctggatgccaacttgcttctggcacattccccaagactcagacactaaccagcgtag 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aatctggatgccaacttgcttctggcacattccccaagactcagacactaaccagcgtag 323
Query: 124 gcaggtggatgaggaggtgggaatgatgcctgaggtatataagtgttggcaccggatcat 183
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 324 gcaggtggatgaggaggtgggaatgatgcctgaggtatataagtgttggcaccggagcat 383
Query: 184 gctccagtcacggtaatgcaaaccctgatgctagtaagactgggaaatgagattccatcc 243
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gctccagtcatggtaatgcaaaccctgatgctagtaagactgggaaatgagattccatcc 443
Query: 244 agcattttgtatgcagagccctcactcttcataccttagtggacttcaca 293
||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 agcatgctggatgcagagccctcactcttcataccttagtggacttcaca 493
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space: 194256
Effective search space used: 194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
