BAC Information

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BAC

Clone NameMSMg01-130O04
Chromosome6 (Build37)
Map Location 16,774,909 - 16,775,718
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041116
Downstream geneTcfec, EG435881, Tes, EG232599, Cav2, Cav1, Met, Capza2, St7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-130O04.T7 (MSMg01no130_o04.b1)MSMg01-130O04.TJ (MSMg01no130_o04.g1)
ACCAG338527AG338528
length7031,166
length of high quality
(start - end)
291 (74 - 364)813 (125 - 937)
definitionCHROMAT_FILE: MSMg01no130_o04.b1 PHD_FILE: MSMg01no130_o04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:44:54 2005CHROMAT_FILE: MSMg01no130_o04.g1 PHD_FILE: MSMg01no130_o04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:44:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAATCCGCGGAA
TTCCAAATATGCTTTCACAGAAACACACAGCGTTGGAAGCAGGTTTTCTG
GGGTGTAGTCCTGATGTAGATTTACTTGTCCTGTGTTGAACCTTATTATT
TTTTCTCTTAAAGTTTCAGTTGATTGAATTTGGTCCAGGCTCATCTACAG
TTTATTTTCTTTCTTTTAATTTTAATCACATCAAATTGTTTCTCCACTGA
AAGGCTTAGGTTAGTCACTGATCTAATAAATTGAGCACCATAGCCTAGCC
AATCGACTAATATAATAACCTTGCTCCTCAAAAACCCAAGCAGTAATACA
ATCTTCAGATTATAGTTTTACAACCAACGCGTCTTCCTGGCTAGCTTGAC
TTACAATTTAATTCGCCCCACTAAAACACACAACTTTATAGCAAATGTAT
GCACAACATGCTATCCTGCATTCTTTACCTATGCACACTTAAGGTTAATA
ATCCGAACATTCAGGTAAATGGCATCTATAGAGACTTTGTACCAACTCAC
TTTGTCCACAGTCAGAGCATCAGTCGATCCATACAGCCTTATAAAATAAC
CACGTTAAGGAGGTGCACCTGAACGCCCTTCACTTCACGTCTCCTCTGGC
CCTTCTTCCCTTCCGGCTCTGCCCTGTGCCTAACATGAACCGGGCTATTG
TGC
NCCGACTCTNNNNNNCACCAAGTGAGGCTGGXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTTTATACTAAGGAATACCGA
ATGGCTGAGAAGCACCTGACCTTATGTTCAGCATCCTTACCCATCAGAGA
AATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGG
CTAAGATCAAAAATTCAGGTAATAGCAGATGCTGGCGAGGATGTAGAGAA
AGAGGAACAGTCCTCCATGGTTAGTGGGATTGCAAGCTTGTACAACCACT
CTGGAATTTGGAATTATATGAAGAGATACATTTACTCTTTGGTCCAATGA
CTGCTGCCTTAATTAGCCAGGGTGAACTAGGGGATATCAAATATATAGGG
TTAAAGTGTTCTCAAGAAGAAAAGGCATGGTGAGGAAAAGAGGGCATCTA
TTTTTAAAAAACAAGTAAATAATAGACGAGTTTATTTTATAGGAGGAAGT
CTTGTATGTGATCTAGAAACAAACAGTATAAGAAGAGTCTATAAGTCCAC
ATAATTTCTAGGATAGGAAACAAAGATTAGAGAATTTCAGAATGATATAC
AAGCATATAAAAAGTTATTACTTTGTCCTCCTAGGATCTAAGACAATAAC
GCCTACTTTACATGCATAAGTTTTCAAACTTTATAAGAAATTATTTAAAT
CTTAGTAGTCTGTTACCTTTCTGTTTTTACATGATTATATTTAACAAAAA
CTGCTGTCTGCTGTACCAGGAAATCGCAAGAGCTGTGCCCAGATACCCAT
AAAGAATAGGAAGGAATTCCATCCTGCTATATCAGAAGTATCACTGTGGC
TTGAAGGTGGGTTGGTGACCTGACAGGTTGACTGCACTTAAAGAATTCAT
CACACTATCCTTTCTTACCTGCTCTCTGTACCAAACTAGCCATCATTTGT
CGCTAGTTCTCAGTTTATATGAAGGAGAATCGGTGCCCTGAAGTCTACTT
AAAAAAACCCTTGATTTTCCCAAATCTCCCATCTGTACTTTTTAAAAAAA
AAATGGTTTCAGGGCCCTTCTTTCTTTTTTTTAAAAAAAAGAACTTCTTT
TTTGAAATACCTTCTCAAGGGGAAAAATAAATGGAAAAATTTTTTAAAAA
AATTTTATTTCTTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no130_o04.g1 MSMg01no130_o04.g1 CHROMAT_FILE:
MSMg01no130_o04.g1 PHD_FILE: MSMg01no130_o04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:44:54 2005
         (813 letters)



>mm_chr6_16774709_16775921
          Length = 1213

 Score = 1299 bits (672), Expect = 0.0
 Identities = 777/812 (95%), Gaps = 4/812 (0%)
 Strand = Plus / Plus

                                                                        
Query: 1    tgttcagcatccttacccatcagagaaatgcaaatcaaaacaaccctgagattccacctc 60
            |||||||||||||||  |||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 201  tgttcagcatccttagtcatcagggaaatgcaaatcaaaacaaccctgagattccacctc 260

                                                                        
Query: 61   acaccagtcagaatggctaagatcaaaaattcaggtaatagcagatgctggcgaggatgt 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261  acaccagtcagaatggctaagatcaaaaattcaggtaatagcagatgctggcgaggatgt 320

                                                                        
Query: 121  agagaaagaggaacagtcctccatggttagtgggattgcaagcttgtacaaccactctgg 180
            |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 321  agagaaagaggagcagtcctccattgttagtgggattgcaagcttgtacaaccactctgg 380

                                                                        
Query: 181  aatttggaattatatgaagagatacatttactctttggtccaatgactgctgccttaatt 240
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct: 381  aatttggaattatatgaagagatacatttactctttggttcaatgactgctgcattaatt 440

                                                                        
Query: 241  agccagggtgaactaggggatatcaaatatatagggttaaagtgttctcaagaagaaaag 300
            |||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||||
Sbjct: 441  agccagggtgaactaggggacatcaaagatatagggttaaagtggtctcaagaagaaaag 500

                                                                        
Query: 301  gcatggtgaggaaaagagggcatctatttttaaaaaacaagtaaataatagacgagttta 360
            |||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||
Sbjct: 501  gcatggtgaggaaaagagggcatctattttaaaaaaacaagtaaataatagatgggttta 560

                                                                        
Query: 361  ttttataggaggaagtcttgtatgtgatctagaaacaaacagtataagaagagtctataa 420
            ||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 561  ttttataggaggaaggcttgtatgtgatctagaagcaaacagtataagaagagtctataa 620

                                                                        
Query: 421  gtccacataatttctaggataggaaacaaagattagagaatttcagaatgatatacaagc 480
             ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 621  atccacataatttctaggataggaaacaaagattagagaatttcaggatgatatacaagc 680

                                                                        
Query: 481  atataaaaagttattactttgtcctcctaggatctaagacaataacgcctactttacatg 540
            || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681  atgtaaaaagttattactttgtcctcctaggatctaagacaataacgcctactttacatg 740

                                                                        
Query: 541  cataagttttcaaactttataagaaattatttaaatcttagtagt-ctgttacctttctg 599
            |||||||||||||||||| |||||||||||||||||||||||||| |  |||||||||||
Sbjct: 741  cataagttttcaaactttgtaagaaattatttaaatcttagtagtaca-ttacctttctg 799

                                                                        
Query: 600  tttttacatgattatatttaa-caaaaactgctgtctgctgtaccaggaaatcgcaagag 658
            ||||||||||| ||||||||| ||||| || ||||| ||||||||||||||| |||||||
Sbjct: 800  tttttacatgaatatatttaatcaaaa-ctactgtcggctgtaccaggaaatagcaagag 858

                                                                        
Query: 659  ctgtgcccagatacccataaagaataggaaggaattccatcctgctatatcagaagtatc 718
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 859  ctgtgcccagatacccataaagaataggaaggaattccatcctgctatatcagaagtatc 918

                                                                        
Query: 719  actgtggcttgaaggtgggttggtgacctgacaggttgactgcacttaaagaattcatca 778
            |||||||||||||||||   |||||||||||||||||| ||  |||||||||||||||||
Sbjct: 919  actgtggcttgaaggtgcactggtgacctgacaggttgcctttacttaaagaattcatca 978

                                            
Query: 779  cactatcctttcttacctgctctctgtaccaa 810
            ||||||||||||| ||||||||||||||||||
Sbjct: 979  cactatcctttctcacctgctctctgtaccaa 1010


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 813
Length of database: 1213
Length adjustment: 10
Effective length of query: 803
Effective length of database: 1203
Effective search space:   966009
Effective search space used:   966009
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)