BAC Information

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BAC

Clone NameMSMg01-130O20
Chromosome6 (Build37)
Map Location 87,983,258 - 88,139,144
singlet/doubletdoublet
Overlap geneRab7, Rpn1
Upstream geneGfpt1, D6Ertd527e, Antxr1, Gkn1, Gkn2, 1190003M12Rik, Bmp10, Arhgap25, Prokr1, 2010301N04Rik, 1810020O05Rik, AB041550, LOC100043118, EG545864, Gp9, Rab43, Isy1, Cnbp, Copg, 8430410A17Rik, LOC665416, H1fx, EG434064, LOC100043131
Downstream geneGata2, Dnajb8, Eefsec, Ruvbl1, Sec61a1, 4933428M03Rik, Mgll, Abtb1, Podxl2, LOC100043146, Mcm2, Gpr175, 4933427D06Rik, Gm1965, LOC100043153, LOC100043159, EG624483
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-130O20.T7 (MSMg01no130_o20.b1)MSMg01-130O20.TJ (MSMg01no130_o20.g1)
ACCAG338559AG338560
length7151,194
length of high quality
(start - end)
323 (41 - 363)630 (126 - 755)
definitionCHROMAT_FILE: MSMg01no130_o20.b1 PHD_FILE: MSMg01no130_o20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:44:58 2005CHROMAT_FILE: MSMg01no130_o20.g1 PHD_FILE: MSMg01no130_o20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:44:58 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,138,830 - 88,139,144)(87,983,258 - 87,983,887)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACAGATCCGCGGAATT
CTCTAATAACATTCGCTTGTTCAGGGGTCTGTGATGTTTTGAACAACGGC
AGGGCTGTGGAATTCTGACGACCAGTTGGGATTATCACAACATGGGGAAG
GAGTGGCTGAGGACCTAAAGGGTCTGTAAGCCCCACGGGCCGGGTTACAA
AGCCTTCCTTGCTTCACTGAACATAGGATAGTCACTGGCTGTGAGGTACA
AGAGTTACCCAGCAGCCACACCCCAGGACCTGCCTACCTGATCTGAATGA
GAGGGAGCTACATGGCCCCTCCTTTCTCTGCACCTGCGGAGGTGAATTCA
CCCCATCTTGTTCTCCTTACCGGGTCCTGCCCAGCAGTGGGACCTGTGGC
CCGAGTGGTACTCGACCCACAGAAAACCACATTATTTAGGTTAATTAGAC
AGAGCAGCCCCAGCCTTGGTGGTCCATTGCTGACTGCGGAGCTGGGACGG
CACACTGCCAAAAGGAGTTTAGCAGGCTCCATTCTGGGGCTTGGGGCTTG
GGAGTAGCTCTGGCCAGGAGTGCTGGGAGTTACCTTAAGCTCTAGTAGCT
TCCTCAGCACTGTCCTGTAAGAGGAGCTGAGTGGGGTTTCCCCCATCCAT
AGACCTTCCCCTCCCATATGGTCATCTACAGACCAAGTCTCGTAGCTTGG
CCGTTTTATACTAGT
CGCCCTTTTTNAAACGATGTGAGGCTGGGGCGCCXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTTTTAAGCTGCCAANTAGATCTCTAA
ATAAAACCATTGTCCTTTAATTACCGCACAAGCCTTGCGAGGCAGATGCA
GGAGGATTTATGTGAGTTTGGGGCCAGCCTAGTCTACAAAGTGAGTTCTA
GAATATCCAGGACTACACAGAGACCCTGTGTCACAAAAGAATAACAACAA
AATTACTGTTTGTTCACAAAGGTGGAGCTGAAGTTGTGGCTCAATGGTAG
ATGGTTGTCTACCCTGCACAGAGCCACGGGTTCAGCAGCCCCAAACTACA
AAATAATACAAAAAGCCACTAGTAATATACTAAAGTCACCGAAATCTTAA
CTTTGTTTATGGCATGTAATATCTTTATACTATTTTCTTTTGCTGATGGC
ACTTCCTTATTAATTTTTAATTTATGTACTTAAGTTATTTAGTCCCTCCC
CAGGCCTTTCTACAGCACAGTGCTCAGCACCATGCATGCTGAGGCTGCCT
GCCCGCTGACTATACTTTCACTTCCCCTGAATCCCAAGGATAGAACTCAG
TGTTCTCTACAGCAGCAAGGAGAAAGAAACAGAAAAGCCAACTCACTGCT
CAGTTTCTAACCAGCACTGTTTGAACAGGTGAAATTACTAATTAACTATA
CATGCCATCTACCCATCACACACACACACACACACACACACACACACACA
CACACACACACTCATTCTAACTACACACACTAACCATACAGGGGAATCTT
TCTAATCAGGCCTGCTTTAAAACCCTACTTGGGTTTAAAAAACCTTGCCC
AGAAGGGTCTATCCTTCAGGGACAACCAGCAGATAGTAGATCCTCTACAA
CTTCAGGCAATGTCATGAGTTCACAGATTTGTAAGCCACCAAGATATCCC
ATTTGGCAGGAAACAGCTGAGAAAGTGCCAGGGAGACAGAACTTTTTTAT
GACCTGGTCAAAAGTTTTAGCTCCCCCTTCCCTAAAAATATGGAAATAAG
GGGAAAAACTTGGTTTTAACCCCGGAAATTTTTTTTTAAAAAAGAGAAAC
TTTTTTTTTTTCCACTTTAAAATGTGTAGAAAGTTCTCCTGTGAAAAGTT
TCTAAAAGAAATAAAATTGGTGTCACTACATCTATTATCTTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no130_o20.b1 MSMg01no130_o20.b1 CHROMAT_FILE:
MSMg01no130_o20.b1 PHD_FILE: MSMg01no130_o20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:44:58 2005
         (323 letters)



>mm_chr6_88138625_88139347
          Length = 723

 Score =  578 bits (299), Expect = e-169
 Identities = 311/315 (98%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattctctaataacattcgcttgttcaggggtctgtgatgttttgaacaacggcagggc 65
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 gaattctctaataacatttgcttgttcaggggtctgtgatgttttgaacaacggcagggc 461

                                                                       
Query: 66  tgtggaattctgacgaccagttgggattatcacaacatggggaaggagtggctgaggacc 125
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 tgtggaattctgacgactagttgggattatcacaacatggggaaggagtggctgaggacc 401

                                                                       
Query: 126 taaagggtctgtaagccccacgggccgggttacaaagccttccttgcttcactgaacata 185
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 taaggggtctgtaagccccacgggccgggttacaaagccttccttgcttcactgaacata 341

                                                                       
Query: 186 ggatagtcactggctgtgaggtacaagagttacccagcagccacaccccaggacctgcct 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 ggatagtcactggctgtgaggtacaagagttacccagcagccacaccccaggacctgcct 281

                                                                       
Query: 246 acctgatctgaatgagagggagctacatggcccctcctttctctgcacctgcggaggtga 305
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 280 acctgatctgaatgagagggagctacatggcccctcccttctctgcacctgcggaggtga 221

                          
Query: 306 attcaccccatcttg 320
           |||||||||||||||
Sbjct: 220 attcaccccatcttg 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space:   224196
Effective search space used:   224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no130_o20.g1 MSMg01no130_o20.g1 CHROMAT_FILE:
MSMg01no130_o20.g1 PHD_FILE: MSMg01no130_o20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:44:58 2005
         (630 letters)



>mm_chr6_87983058_87984087
          Length = 1030

 Score = 1180 bits (610), Expect = 0.0
 Identities = 625/630 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcacaagccttgcgaggcagatgcaggaggatttatgtgagtttggggccagcctagtct 60
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcacaagccttgggaggcagatgcaggaggatttatgtgagtttggggccagcctagtct 260

                                                                       
Query: 61  acaaagtgagttctagaatatccaggactacacagagaccctgtgtcacaaaagaataac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acaaagtgagttctagaatatccaggactacacagagaccctgtgtcacaaaagaataac 320

                                                                       
Query: 121 aacaaaattactgtttgttcacaaaggtggagctgaagttgtggctcaatggtagatggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacaaaattactgtttgttcacaaaggtggagctgaagttgtggctcaatggtagatggt 380

                                                                       
Query: 181 tgtctaccctgcacagagccacgggttcagcagccccaaactacaaaataatacaaaaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtctaccctgcacagagccacgggttcagcagccccaaactacaaaataatacaaaaag 440

                                                                       
Query: 241 ccactagtaatatactaaagtcaccgaaatcttaactttgtttatggcatgtaatatctt 300
           ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||
Sbjct: 441 ccactagtaatatactaaagtcaccgaaatcttaactttgagtatggcatgtaatatctt 500

                                                                       
Query: 301 tatactattttcttttgctgatggcacttccttattaatttttaatttatgtacttaagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tatactattttcttttgctgatggcacttccttattaatttttaatttatgtacttaagt 560

                                                                       
Query: 361 tatttagtccctccccaggcctttctacagcacagtgctcagcaccatgcatgctgaggc 420
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tatttcgtccctccccaggcctttctacagcacagtgctcagcaccatgcatgctgaggc 620

                                                                       
Query: 421 tgcctgcccgctgactatactttcacttcccctgaatcccaaggatagaactcagtgttc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgcctgcccgctgactatactttcacttcccctgaatcccaaggatagaactcagtgttc 680

                                                                       
Query: 481 tctacagcagcaaggagaaagaaacagaaaagccaactcactgctcagtttctaaccagc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tctacagcagcaaggagaaagaaacagaaaagccaactcactgctcagtttctaaccagc 740

                                                                       
Query: 541 actgtttgaacaggtgaaattactaattaactatacatgccatctacccatcacacacac 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 actgtttgaacaggtgaaattactaattaactatacatgccatctacccatcacacacac 800

                                         
Query: 601 acacacacacacacacacacacacacacac 630
           |||||||| |||||||||||||||||||||
Sbjct: 801 acacacactcacacacacacacacacacac 830


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 110
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1030
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1020
Effective search space:   632400
Effective search space used:   632400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)