BAC Information

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BAC

Clone NameMSMg01-131E23
Chromosome6 (Build37)
Map Location 129,065,169 - 129,065,411
singlet/doubletsinglet
Overlap genenone
Upstream geneTspan9, LOC100043853, LOC667560, Tead4, LOC652986, Tulp3, 5930416I19Rik, Foxm1, Nrip2, Itfg2, Fkbp4, EG667598, Pzp, LOC384494, EG667610, BC048546, Klrb1a, EG545878, LOC677440, Clec2h, LOC100043863, LOC100043861, Klrb1c, LOC100043862, Klrb1d, LOC667706, Clec2i, Clec2g, LOC667715, BC064078, Clec2f, Klrb1f, Clec2e
Downstream geneKlrb1-ps1, Clec2d, Cd69, 4922502D21Rik, Clec12a, 4933425B16Rik, Clec1b, Clec9a, Clec1a, Clec7a, Olr1, D630042F21Rik, Gabarapl1, Klre1, Klrd1, Klrk1, Klrc3, Klrc2, Klrc1, LOC640755, Klri1, Klri2, Gm156, Klra17, Klra5, LOC667764, Klra6, LOC100038893, LOC100038894, LOC100038895, Klra4, LOC667769, LOC100038897, Klra8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-131E23.T7 (MSMg01no131_e23.b1)MSMg01-131E23.TJ (MSMg01no131_e23.g1)
ACCAG338846AG338847
length696696
length of high quality
(start - end)
331 (325 - 655)221 (135 - 355)
definitionCHROMAT_FILE: MSMg01no131_e23.b1 PHD_FILE: MSMg01no131_e23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:45:29 2005CHROMAT_FILE: MSMg01no131_e23.g1 PHD_FILE: MSMg01no131_e23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:45:29 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NNTTCATCTATAAXXXXXXXXXXXXXXXXXXXXXXXTCCAAAGAGGATCC
GCGGAATTCTTACTTCCAAAGACTGGTGTTGTGGGTATCTGGCGGTAGTC
AGCCTACTGTGATCCCTATCCACCCTGGTGCTGCTTGGACCGAAAGGGGC
TTGTGCCCCTACTCAGACCAAAGGGGCTTGTGCCCCTACTCAGACCGGGT
TTTTGCTTCCCTGACTAATGCAGTCTCAAGTCCCACACGATTGGATTGGA
GCAGATGCTGTGTTCCACTCACCAGAAGTCTTAAGATCGCTTGGCGGGTG
TTGTGGGCAGCTGGAGGTATTCAGCCAACAGTGCGCCCTAGCTACCCCGG
TGCTGCTCGGACCGAAAGGGGCTTGTGCCCCTACTCAGACTGGGTTTTCT
GCTTTCCTAACTAATGCAGTCTCAGGTCCCATGTGATTGGATTGGAGCAG
ATCGCGAAAACAATTCTTATCAATAAAAACCACCTGCAGGAATCACCTTC
TGTGATCTCAATCTGTACTACAAAGCAATAGTGAATAAAAATAAAAACCT
GCATGGCAATAGTACAGAGATAGAGAAGTGGATTAATAGAATAGAATTGA
AAACCCAGAAATAAACCCACACACCTATGGTCACCTGATCATTATAAAGA
AACTTAAACCATACAGCGGAAAAAAAAGTAAGCATTTTCTTTTTTG
CCAACCGATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXATGACTGACACAACAGGAAAAG
CACTGAGGGCAGAGCGTTTTTCCCAACTCTGGCTCTGCCCTGTCCTGAAG
GTCCAGGTGGATGTAACATCATTCACCTGAGTGAAAGAACTTCATCTGTG
AGAGCTCAGGGAGTGGAGGACTTGGATCTATGGGATGTGCTAACTCCTCC
AAGGGTTTCCAGGCCTAGAGCCTTAGTCACACATTCACACATTACAAGTG
AAGAAGAAAAACAAGGATTTCCTTATAGTCACCTTCTGTGGTCAGAAAGG
AATTGTGTTAGGTACTCTCCACCACCCCCCCGTGCGGATGTCAGCTAGCT
GTGAGTTCCAGGAGACAGGAAAAGAAAAATAATAGCATAGGGCTCGGACG
CATCCGCCAAGACCACTAAAGAAGGAAGCAGGGGGAACTATATCTGAGGG
CCTCACAGCTCACTTAAGACTCAGTGGAGCCTCCTCAGCTGTCTATGATG
ACTGCCATTTTACTCAACACCAGGATCCACCTGTTTAATTTTTTGCAGTG
CTGGGAATCAAACTTAGGACCTCATGAATTTGAGGTAAGCACTTCTTCAC
CAAACTATGTTCCTAGCCCTAGACTGGAGATTTCAGTTTGTTTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no131_e23.g1 MSMg01no131_e23.g1 CHROMAT_FILE:
MSMg01no131_e23.g1 PHD_FILE: MSMg01no131_e23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:45:29 2005
         (221 letters)



>mm_chr6_129065070_129065690
          Length = 621

 Score =  319 bits (165), Expect = 7e-92
 Identities = 213/243 (87%), Gaps = 22/243 (9%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgccctgtcctgaaggtccaggtggatgtaacatcattcacctgagtgaaagaacttca 60
           |||||||||||||||||||||||||||||||||||||||||||||||  |||| ||||||
Sbjct: 342 ctgccctgtcctgaaggtccaggtggatgtaacatcattcacctgagcaaaaggacttca 283

                                                                       
Query: 61  tctgtgagagctcagggagtggaggacttggatctatgggatgtgctaactcctccaagg 120
           ||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct: 282 tctgtcagagctcagggagtggaggacttgggtctatgggatgtgataactcctccaagg 223

                                                                       
Query: 121 gtttccaggcctagagccttag----------------------tcacacattcacacat 158
           |||| |||||||||||||||||                      ||||||||||||||||
Sbjct: 222 gttttcaggcctagagccttagagcaaggactactaatgccaagtcacacattcacacat 163

                                                                       
Query: 159 tacaagtgaagaagaaaaacaaggatttccttatagtcaccttctgtggtcagaaaggaa 218
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 162 tacaagtgaagaagaaaaacaaggatttccttaaagtcaccttctgtggtcagaaaggaa 103

              
Query: 219 ttg 221
           |||
Sbjct: 102 ttg 100


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 221
Length of database: 621
Length adjustment: 9
Effective length of query: 212
Effective length of database: 612
Effective search space:   129744
Effective search space used:   129744
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)