BAC Information

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BAC

Clone NameMSMg01-131F06
Chromosome6 (Build37)
Map Location 102,700,863 - 102,701,188
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666084, Cntn3, EG666123
Downstream geneChl1, LOC666141
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-131F06.T7 (MSMg01no131_f06.b1)MSMg01-131F06.TJ (MSMg01no131_f06.g1)
ACCAG338860AG338861
length759710
length of high quality
(start - end)
49 (76 - 124)518 (79 - 596)
definitionCHROMAT_FILE: MSMg01no131_f06.b1 PHD_FILE: MSMg01no131_f06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:45:30 2005CHROMAT_FILE: MSMg01no131_f06.g1 PHD_FILE: MSMg01no131_f06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:45:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCTCTAAATTTGCGGCGCTAAACGACTCCTANATCGTAGGATGCGCGG
AATTCACTATTATTTCGAAAAAGTCAGGTTCTGACAAAAGTTACTTTCAA
ATCTTTGTACATAAACATGTGTCACTATGGTATGTATAATATGGAATGTC
ATAATACATTGTTGACAGTGGTCAAATTTATCCATGTCCCACACTGCTCG
GTAGAATCTACTTTGCCTAGAATATTTCTGACATTATAGCTGTCCTACAA
ACCCATATCAAAATGCTTTTCTGTTGTTTTTTATTCCTTGACAATGTTTC
ATTCCAAAATATCCACTTCCTTATTTTTTGACACATACTAGACGCTCTCA
ATGATAATAGTGTGTTTTTTATCCCCCCCTCCTCCTTACACTTTCATGTT
TCTTTTCAATACCGCAACCTGCTCCTATCACCAATCTCCCCCGATGACAG
TATGCCTGCTCTTAAATTTGCTTCTCCCTTCTTCCCTTGATGCTTAGTCT
GCTATCTTTTCTTAATTTATACTATTTTCTTTTAGTGTTTTTTTCAAATT
CTCGATAATAATTCTTTCCCTAACACAGTTCGATAGTCTTATTTTATTAA
ATTTCTCCTCATACTCCCATTTTTTCTACATTTTTAATATATTTATTCCT
TATATTTAAATATTTTCCCATTTTTTCTCCTAGTTCTTCCACTCTTCCCA
TCCTTTTCTACAATCTTTTATAATCTCTTATGTGTCATCCAATTATACTC
CATCTCCTC
NNNNCTCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAGCTAAAATCTCAAATCCCCAA
TAAAAGAATGGAGCATGGAAAAAGCAAGCAAATGTTGAAGCAGTGTTATA
TATTGCAAAGAGGAATGGAGAAAAGGATCAGTAAGCACAGCTTTCTTAAA
GATACTTCCTGGTAATTCAAGGTTTTGATAATTATCCTGAGCTTCTTCAA
ACTTAAAGCACTCCTTCTGCCTCAGACTCCTGAGTGCTCAGATTTCGGGC
CTGATCCAACATGTCTGGCTCAGTTACTCTTATCTTTATTCATTTAGCCG
TCAGTTCTTTACGTACCAGTTACAAAAAGAAAAGAAAAGAAAAGAAAAGA
AAAGAAAAGAAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGG
AAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGG
AAAGGAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGA
AAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAAGAAAAA
GCCAGAGAATAAGTAGAGCAGGACTTAGCACAGGGCAATTACCCCCAAAA
TATAACTGGAATTGTTGAATAAATAAAATATCTCAGAGTACCGATGTTCA
CCTCCATTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no131_f06.g1 MSMg01no131_f06.g1 CHROMAT_FILE:
MSMg01no131_f06.g1 PHD_FILE: MSMg01no131_f06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:45:30 2005
         (518 letters)



>mm_chr6_102700849_102701767
          Length = 919

 Score =  503 bits (260), Expect = e-146
 Identities = 315/342 (92%), Gaps = 18/342 (5%)
 Strand = Plus / Minus

                                                                       
Query: 1   agctaaaatctcaaatccccaataaaagaatggagcatggaaaaagcaagcaaatgttga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 agctaaaatctcaaatccccaataaaagaatggagcatggaaaaagcaagcaaatgttga 281

                                                                       
Query: 61  agcagtgttatatattgcaaagaggaatggagaaaaggatcagtaagcac-agctttctt 119
           ||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 280 agcagtgatatatattgcaaagaggaatggagaaaaggatcagtaagcacaagctttctt 221

                                                                       
Query: 120 aaagatacttcctggtaattcaaggttttgataattatcctgagcttcttcaaacttaaa 179
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 aaagatacttcctgataattcaaggttttgataattatcctgagcttcttcaaacttaaa 161

                                                                       
Query: 180 gcactccttctgcctcagactcctgagtgctcagatttcgggcctgatccaacatgtctg 239
           ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 160 gcactccttctgcctcagactcctgagtgctcagatttcaggcatgatccaacatgtctg 101

                                                                       
Query: 240 gctcagttactcttatctttattcatttagccgtcagttctttacgtaccagttacaaaa 299
           ||||||||||||||||| |||||||||||||||||||        ||||       ||||
Sbjct: 100 gctcagttactcttatcgttattcatttagccgtcag--------gtac-------aaaa 56

                                                     
Query: 300 agaaaagaaaagaaaagaaaagaaaa-gaaaagaaaaggaaa 340
           | |||| |||||||||||||| |||| |||| ||||| ||||
Sbjct: 55  acaaaataaaagaaaagaaaaaaaaaagaaa-gaaaaagaaa 15


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 919
Length adjustment: 10
Effective length of query: 508
Effective length of database: 909
Effective search space:   461772
Effective search space used:   461772
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)