BAC Information

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BAC

Clone NameMSMg01-131F07
Chromosome6 (Build37)
Map Location 74,937,140 - 74,937,318
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneEG668132, LOC668136, LOC621306, LOC100042942, LOC668143, EG668145
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-131F07.T7 (MSMg01no131_f07.b1)MSMg01-131F07.TJ (MSMg01no131_f07.g1)
ACCAG338862AG338863
length741737
length of high quality
(start - end)
184 (132 - 315)288 (80 - 367)
definitionCHROMAT_FILE: MSMg01no131_f07.b1 PHD_FILE: MSMg01no131_f07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:45:30 2005CHROMAT_FILE: MSMg01no131_f07.g1 PHD_FILE: MSMg01no131_f07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:45:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTAAGTTATCTTGATTTGGAAAATATATAGAAGAACATATATAT
ATATATATATATGTGTGTTTTTGTCTATTTGTGTTTTTAATTAAATTATG
ATTATTAAAAATTATAATAAATGTTGAACTTGAATTGTTCTCCATAATAT
AACTTACTCATTGTGAAATTTTACAAAAGCTGACTGCTTTATACACTATT
ATGCTTTTACTGAATTTATTAATCTGTAAACTGTATTCCTGCTTTAAAAA
TATTTCTATAACTGGGCAGTGTTTTTGCAGGCCTTTAATCTCAGCACTTG
GGAAGCAGATTTTTTTTATTCCCCCACCCCCCACAACAGACTGGTCTACT
GAGTGAGTTCCTGGGCCGCCAGCGAAAAAAAAAATAGAGACACCCTGTCT
CAAAAAACATATATATATATATATATATATATATACTATATATATATATA
TTTATATATATATACATATATACATACACATATATATTTAGTATAACATC
TGAGTACATATTATTATCCTTTCTCGTATATTCTCTCTTTTTCGTTCCCA
AATAAGCGCCAGGGCCTATCACTGATCAAGAAACATAAATAATAATTACC
AATCTTAAATTATCACATTAAGTAGAAAAGTAGATTTTAACATATTTTTT
TATAAAAACCTGCCCAAATAAAATTCCAATACAAACCCCGT
CCCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAATTTGGGAATACGGAATG
ACAGAGAAGCACCTAAAAAAATGTTCAATCTCCTTAATGATCAGGGAAAT
GAAAATCAAAACAACCCTGAGATTCCATCTCACACCAGTCAGAAGGGCTA
AGATCAAAAATTCAAGTGACAGCAGATGCTTTCGAGGATGTGGAGAAGGA
GGAACACTCCTCCATTGTTGGTGGGATTGCAATCTTGTACAACCACTCTG
GAAATCAGTCTGGTGGTTCCTCAGAATATTGGACATAGTACTTCCAGAGG
ATCCCGCAATACCTCTCTTGTTTTTATCTCCCCCCGATGCCCCAACTGGT
AAGAAGGACACATGCTCCACTATGTTCATAGAAGACAAATTTATAATAGC
CGGAAGCTGGAAGGAACCCAGATGCCCCTCAACAGAGGAATGGATACTGA
AGATGTGGTACATCTACACCATGGAGAACTACTCAGCTATTTAAAAAGAT
TGAATTTATGAAATTCCTGGCCAAATGGATGGGACAGGAAGGGATCCTCC
TGAGTGAGGGTACTCATTTCCAAAGGAACTCCCACAAAAAGGACGCCCTG
AAAAGTGGATATTAGTCCATAATCTAATATCCCCTGTATTTAGATCAATT
TCCCAAACCCTGGAACTCCAGAAAAATGAAACTGATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no131_f07.b1 MSMg01no131_f07.b1 CHROMAT_FILE:
MSMg01no131_f07.b1 PHD_FILE: MSMg01no131_f07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:45:30 2005
         (184 letters)



>mm_chr6_74936895_74937478
          Length = 584

 Score =  294 bits (152), Expect = 2e-84
 Identities = 173/180 (96%), Gaps = 2/180 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtttttaattaaattatgattattaaaaattataataaatgt-tgaacttgaattgttc 59
           ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 424 tgtttttaattaaattatgattattaaaaattataataaatgtct-aacttgaattgttc 366

                                                                       
Query: 60  tccataatataacttactcattgtgaaattttacaaaagctgactgctttatacactatt 119
           ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct: 365 tccataatataacttactcattgtgaaattttaaaaaagctgactgctttatacaccatt 306

                                                                       
Query: 120 atgcttttactgaatttattaatctgtaaactgtattcctgctttaaaaatatttctata 179
           || |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 305 atactttaactgaatttattaatctgtaaactgtattccttctttaaaaatatttctata 246


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 184
Length of database: 584
Length adjustment: 8
Effective length of query: 176
Effective length of database: 576
Effective search space:   101376
Effective search space used:   101376
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)