Query= MSMg01no131_l23.b1 MSMg01no131_l23.b1 CHROMAT_FILE:
MSMg01no131_l23.b1 PHD_FILE: MSMg01no131_l23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:04 2005
(249 letters)
>mm_chr6_127195924_127196572
Length = 649
Score = 387 bits (200), Expect = e-112
Identities = 236/248 (95%), Gaps = 2/248 (0%)
Strand = Plus / Minus
Query: 1 ctttccctaaccttcaagaccaagctaactctccgtcaccttttacg-ctccagtatcag 59
||||||||||||||||||||||||||||||||| ||||||| | | | | ||||||||||
Sbjct: 447 ctttccctaaccttcaagaccaagctaactctcagtcacctctaaagac-ccagtatcag 389
Query: 60 caggtacacagtgtagtcagccagtgtctaagacccagctggggctgtatagatccattc 119
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 388 caggtacacagtgcagtcagccagtgtctaagacccagctggggctgtatagatccactc 329
Query: 120 agaccggctttcatagcgtagggggtcttggaggcgggcccaagctcacccaggtttggt 179
|||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct: 328 agactggctttcatagcatagggggtcttggagaagggcccaagctcacccaggtttggt 269
Query: 180 gtcaatccttggattcactgagcccattcaggcaggttcatctgtttacctcctggaggc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 gtcaatccttggattcactgagcccattcaggcaggttcatctgtttacctcctggaggc 209
Query: 240 ctgggtga 247
||||||||
Sbjct: 208 ctgggtga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space: 153600
Effective search space used: 153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no131_l23.g1 MSMg01no131_l23.g1 CHROMAT_FILE:
MSMg01no131_l23.g1 PHD_FILE: MSMg01no131_l23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:04 2005
(443 letters)
>mm_chr6_127018745_127019587
Length = 843
Score = 803 bits (415), Expect = 0.0
Identities = 436/443 (98%), Gaps = 1/443 (0%)
Strand = Plus / Plus
Query: 1 taacagttcatccacatcttgctaatttggcactcccatggagcccccggggtgagcaaa 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 taacagttcatccacatcttgctaatttggcactcccatggagccccgggggtgagcaaa 260
Query: 61 gcctttctcagtagttttagaagccttgaaaacatttgttcttttctttattcccaaaat 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcctttctcagtagttttagaagccttgaaaacatttgttcttttctttattcccaaaac 320
Query: 121 gccctccttctcacccctcttctcagggaagattctcctaccgtgaactgtctcacagga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gccctccttctcacccctcttctcagggaagattctcctaccgtgaactgtctcacagga 380
Query: 181 acttcccagccctttaccattcttttttttttttttaagatttattttattaatatatgt 240
|||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct: 381 acttcccagccctttaccattc-ttttttttttttaaagatttattttattaatatatgt 439
Query: 241 aagtactttgtagctgtcttcagacactccagaagagggagtcagatcttgttgcgcatg 300
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 440 aagtacactgtagctgtcttcagacactccagaagagggagtcagatcttgttgcggatg 499
Query: 301 gttgtgagccaccatgtggttgctgggatttgaactttaccattcttaaccagaagagga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gttgtgagccaccatgtggttgctgggatttgaactttaccattcttaaccagaagagga 559
Query: 361 aacatggagtcaccaataagcaagcgtttctgagaaatttgcatttcaatcctgaaagcc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 aacatggagtcaccaataagcaagcgtttctgagaaatttgcatttcaatcctgaaagcc 619
Query: 421 agttattccttcaattagctaag 443
|||||||||||||||||||||||
Sbjct: 620 agttattccttcaattagctaag 642
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 443
Length of database: 843
Length adjustment: 10
Effective length of query: 433
Effective length of database: 833
Effective search space: 360689
Effective search space used: 360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
