BAC Information

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BAC

Clone NameMSMg01-132A19
Chromosome6 (Build37)
Map Location 85,895,393 - 85,895,878
singlet/doubletsinglet
Overlap geneDusp11
Upstream geneExoc6b, Npm3-ps1, EG545861, EG623016, Spr, LOC665086, LOC665089, Emx1, Sfxn5, Rab11fip5, Noto, Smyd5, 1700040I03Rik, Cct7, Fbxo41, Egr4, Alms1, LOC100043497, EG665134, LOC100043493, Cml3, LOC623273, Cml5, Cml4, LOC100043504, LOC100043508, Cml2, LOC665177, 1700019G17Rik, Cml1, Tprkb, EG434057, LOC665213
Downstream geneFigla, Add2, Tgfa, LOC665233, LOC100043094, LOC100043527, 2010309E21Rik, Snrpg, Pcyox1, Tia1, C87436, 2310040G24Rik, Pcbp1, Asprv1, Mxd1, 2610209M04Rik, Gmcl1, Anxa4, 2610306M01Rik, Aak1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-132A19.T7 (MSMg01no132_a19.b1)MSMg01-132A19.TJ (MSMg01no132_a19.g1)
ACCAG339392AG339393
length733736
length of high quality
(start - end)		661 (71 - 731)668 (69 - 736)
definitionCHROMAT_FILE: MSMg01no132_a19.b1 PHD_FILE: MSMg01no132_a19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:27 2005CHROMAT_FILE: MSMg01no132_a19.g1 PHD_FILE: MSMg01no132_a19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAAATTTGCGGCGCTAAACGACTCCTATATTTCGAAGTAGGCGGAATTCT
TCCTTTGTTACTGAAAATATAGCTCTCAGCCTACCCACTCACTCCACAGC
CCTTTGCAGCCTTTGATGAAGTTACTAGATAAGTGTGGTCATCACGCGCG
TCGTGTTCATGGCTGTGGGTTCTTTCTGGCCTTCCTCTTTCCTTAACGTT
TTTGCCTCATTCATTTGGCCATTTTCTGTTGATTATGTCACAAATTCATC
TTCTCCATCTGATAGCATTATAAACCGTCTCAGTGAATGATGCGCCCTTT
GATTTGACTCCTTTTCTGGAGCTTCTTTAAATGCCCCAGTCAGGTGCCAG
GTCTCGTTGGTAGGGCTGCCATGCTAGAGTACCACAGACTGAGGGAGAAC
ATCTATAGGAACTTTTTGTGTCTCATAGTTTTAGAAGCTGGGAAGGATAG
AGTCAGCAAGAATTTCTTCTTGTAGATGACTGGTACTTCACTGTCTTCTT
GCGGTCTTCTGTGTCTTAACATCTCCTCCACTCGTCCCTCCCCCCCTTTC
CTTTTTTCCCTTATGATACGCTGAGATGCATCGCCAGCTCTGTCTTCTCA
AAGATGCCAGGTCATTAGAATCAGACTCACTGTGGAGACCTCATTTGCCT
CTTGAAAGACTCCCCAAATGCGGTGATATTTCAGATACTGGGGCTTAGAA
CTTTACCAGCAATTTGAGGAAACACAACTGTCC

GAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCAAAAACTGGTAGAAGACATAAAAGAAAAGCT
TCAAGAAACTGTATTTGGTAATCACTTCTTTGCATGACAGCAAAAGCGGT
CATGGACAAGTGAAACTGAAGCAAGGCTTCCCAAAGTACTTGCTGAGAGT
TAAACATAGAATTTATAAGGAGCATGTGTGCCTTGAAAACAAAAAACAAA
TCTGACTTAAAAGTGTACAAGGAGTTAAACAAATAGTTCTCCAAAGAAAA
TAGACATGACCCAAGAAAATACGTAATGCACTCAACTAATTGAAGAGAAA
TGCAGTTCAAAACCACAAGGAACTAACAGCTCACACTATGTAAGAAAAGC
TACCAAAAGAATTGTTAGGAAAAATAAGGAATTCCTGCATCACCGGCAAG
AACGTTGTACAACCAATTTAAGCTTATCCCCGACTAGCTTAGAAATAAAT
GAGCCTCAGACTATGGTTATTTTATTTGGCTTTGACAATTACTGGGGGTC
ACCCCTAATCTTTTCTAATTGCTGGCCTGGCTCCCTCCCCAGTGATGTAT
CCCAAGTATTTGCTGTTTCTTCTGGCCATGTGCTCATGGTAACCACTTCT
CATGGTGCCTTCTTGTCTCTCTCTTCGGGGTCTCTCTTCTCTTCCTCTCT
TCTCCACCCCCACCTGGAAACTCAAAACCCACCTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no132_a19.b1 MSMg01no132_a19.b1 CHROMAT_FILE:
MSMg01no132_a19.b1 PHD_FILE: MSMg01no132_a19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:27 2005
         (661 letters)



>mm_chr6_85895393_85896453
          Length = 1061

 Score =  940 bits (486), Expect = 0.0
 Identities = 486/486 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agctctcagcctacccactcactccacagccctttgcagcctttgatgaagttactagat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 agctctcagcctacccactcactccacagccctttgcagcctttgatgaagttactagat 427

                                                                       
Query: 61  aagtgtggtcatcacgcgcgtcgtgttcatggctgtgggttctttctggccttcctcttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 aagtgtggtcatcacgcgcgtcgtgttcatggctgtgggttctttctggccttcctcttt 367

                                                                       
Query: 121 ccttaacgtttttgcctcattcatttggccattttctgttgattatgtcacaaattcatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ccttaacgtttttgcctcattcatttggccattttctgttgattatgtcacaaattcatc 307

                                                                       
Query: 181 ttctccatctgatagcattataaaccgtctcagtgaatgatgcgccctttgatttgactc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ttctccatctgatagcattataaaccgtctcagtgaatgatgcgccctttgatttgactc 247

                                                                       
Query: 241 cttttctggagcttctttaaatgccccagtcaggtgccaggtctcgttggtagggctgcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 cttttctggagcttctttaaatgccccagtcaggtgccaggtctcgttggtagggctgcc 187

                                                                       
Query: 301 atgctagagtaccacagactgagggagaacatctataggaactttttgtgtctcatagtt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 atgctagagtaccacagactgagggagaacatctataggaactttttgtgtctcatagtt 127

                                                                       
Query: 361 ttagaagctgggaaggatagagtcagcaagaatttcttcttgtagatgactggtacttca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 ttagaagctgggaaggatagagtcagcaagaatttcttcttgtagatgactggtacttca 67

                                                                       
Query: 421 ctgtcttcttgcggtcttctgtgtcttaacatctcctccactcgtccctccccccctttc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66  ctgtcttcttgcggtcttctgtgtcttaacatctcctccactcgtccctccccccctttc 7

                 
Query: 481 cttttt 486
           ||||||
Sbjct: 6   cttttt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1061
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1051
Effective search space:   684201
Effective search space used:   684201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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