Query= MSMg01no132_d08.b1 MSMg01no132_d08.b1 CHROMAT_FILE:
MSMg01no132_d08.b1 PHD_FILE: MSMg01no132_d08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:39 2005
(641 letters)
>mm_chr6_128789096_128790136
Length = 1041
Score = 1147 bits (593), Expect = 0.0
Identities = 626/637 (98%)
Strand = Plus / Minus
Query: 4 ggaattcttcaatctccgatggaagagatgtttagtttcaatcacctccattccatcccc 63
||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 840 ggaattcttcaatctaggatggaagagctgtttagtttcaatcacctccattccatcccc 781
Query: 64 actgactgagaaaaccctggaagtccatggcggaatgaatcacaatccacctttgtcctc 123
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 780 actgactgagaaaagcctggaagtccatggcggaatgaatcacaatccacctttgtcctc 721
Query: 124 atcccacagtagcagaggctcttacgtccggctagtaggtggcatcacacccatcacctt 183
|||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||||
Sbjct: 720 atcccacagtagcagaggctcttaggtcctgctagtaggtggtatcacacccatcacctt 661
Query: 184 tgacagaccttagaatcccatgcacttaggggtcttgaccacatgggggcataccagagg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 tgacagaccttagaatcccatgcacttaggggtcttgaccacatgggggcataccagagg 601
Query: 244 tgcagtgacgagtcggtctttccggacctcggtcagtgagcagacaaacacaatggttgc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 tgcagtgacgagtcggtctttccggacctcggtcagtgagcagacaaacacaatggttgc 541
Query: 304 cagagaggaggagagtggtcccatcctggatgtgatggaatcgccacaaacaatctaggg 363
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 540 cagagacgaggagagtggtcccatcctggatgtgatggaatcgccacaaactatctaggg 481
Query: 364 aagggagaactctaagcaacctggtgaatagttgaggccagctgagcccaagagaagagc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 aagggagaactctaagcaacctggtgaatagttgaggccagctgagcccaagagaagagc 421
Query: 424 aaagctgtcaggagttcctaggtcctggtgcttgaggcggtccatgtatgccaaaactac 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 aaagctgtcaggagttcctaggtcctggtgcttgaggcggtccatgtatgccaaaactac 361
Query: 484 ttttttcaaaatgagaggagtagtaaagagaggagggaggagaggacgacgtcgagttga 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 ttttttcaaaatgagaggagtagtaaagagaggagggaggagaggacgacgtcgagttga 301
Query: 544 tttggagtcactagcaacagcatgaaagaggtcatcacgctaagtgactagggcagacgc 603
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 300 tttggagtcactagcaacagcatgaaagaagtcatcacgctaagtgactagggcagacgc 241
Query: 604 cagcgcgcaaatcctccggtcatacgcagggtgtgga 640
||||||||||||||||||| |||||||||||||||||
Sbjct: 240 cagcgcgcaaatcctccggccatacgcagggtgtgga 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1041
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1031
Effective search space: 650561
Effective search space used: 650561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no132_d08.g1 MSMg01no132_d08.g1 CHROMAT_FILE:
MSMg01no132_d08.g1 PHD_FILE: MSMg01no132_d08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:39 2005
(628 letters)
>mm_chr6_128729499_128730526
Length = 1028
Score = 1118 bits (578), Expect = 0.0
Identities = 619/638 (97%), Gaps = 12/638 (1%)
Strand = Plus / Plus
Query: 1 ttggggtccacaggcttttgcagattatggaccccaggtttcactgaaatagtcaaacct 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 193 ttggggtccacaggcttttgcagattatggactccaggtttcactgaaatagtcaaacct 252
Query: 61 ttatataaggccaccagagagggcaaagactttgcttagactcaagatcatcaaaaggcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ttatataaggccaccagagagggcaaagactttgcttagactcaagatcatcaaaaggcc 312
Query: 121 tttgataaaataaagcaggccctactgtcagctcccactttggggctaccagacatcaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 tttgataaaataaagcaggccctactgtcagctcccactttggggctaccagacatcaca 372
Query: 181 aaaccatttcacttgtaggtcgatgagtcaacgaatggaaaggaatagccaaaggggtcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 aaaccatttcacttgtaggtcgatgagtcaacgaatggaaaggaatagccaaaggggtcc 432
Query: 241 tgactcaaactttgggggccatgaaagcagcctgtgacctatctttctaagaaattagat 300
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tgactcaaactttgggagccatgaaagcagcctgtgacctatctttctaagaaattagat 492
Query: 301 ccagtcttccatggctgttggcagaggagctcaggcacagagaccagcaaatgtcacaca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 ccagtcttccatggctgttggcagaggagctcaggcacagagaccagcaaatgtcacaca 552
Query: 361 gacacaaggattagaatccagtgtccctcagctaccagggcttctttgcatagaactctt 420
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 553 gacacaaggattagaatccagtg-ccctcagctaccagggcttctttgcatagaactctt 611
Query: 421 ctcttagaatggcacaactgtgtctgtgtacactgacatttacaca---------atcaa 471
|||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 612 ctcttagaatggcacaactgtgtctgtgtacactgacatttacacactttacacaatcaa 671
Query: 472 gaatctgtaagaagcccagtgcttttagagtccatgtgctgtgccactaactgcactggg 531
|||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 672 gaatctgtaagaggcccagtgctttcagagtccatgtgctgtgccactaactgcactggg 731
Query: 532 aggcagacagcagagacaggttaggtgcagagatctggtgctgatggtaaagtaattgag 591
||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||
Sbjct: 732 aggcagacagcagagacaggttaggtgcagagatctggtgcggatggtaaaataatc-ag 790
Query: 592 -atgggattcgcagtcaggagtcattactcggggtttc 628
|||||||||||||||||||||||||||||||||||||
Sbjct: 791 gatgggattcgcagtcaggagtcattactcggggtttc 828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1028
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1018
Effective search space: 629124
Effective search space used: 629124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
